Pairwise Alignments

Query, 313 a.a., cytochrome c oxidase subunit, cbb3-type from Pseudomonas putida KT2440

Subject, 286 a.a., cytochrome-c oxidase, cbb3-type subunit III from Magnetospirillum magneticum AMB-1

 Score =  143 bits (360), Expect = 5e-39
 Identities = 87/277 (31%), Positives = 132/277 (47%), Gaps = 22/277 (7%)

Query: 39  TMGHSFDGIEEYDNPLPKWWFWLFVGTLAFSVGYLILYPGLGNWKGILPGYENGWTGANE 98
           T GH +DGI+E + PLPKWW ++F  T+ +++GY + YP      G   G   G++   E
Sbjct: 14  TTGHEWDGIKELNTPLPKWWVYVFWATVLWAIGYWVAYPAWPLVNGYTKG-TLGYSSRGE 72

Query: 99  WQKEMDKADARFGPIFAKYAAMPVEEVAKDPQALKM----GSRLFASNCSVCHGSDAKGA 154
              E+           +K  A  V  + KD   L+     G   F  NC  CHG    GA
Sbjct: 73  LDNELAAQKKSRSAWLSKIEASDVAAIEKDKDLLRYAMAGGKIAFNENCGACHGVGGVGA 132

Query: 155 FGFPNLTDNDWRWGGDPETIKTSIMSG--------RHGVMPAWA--EVIGDQGVADVAAF 204
           +G+P L D++W WGG    I+ +I  G        R   MP +    V+  + +A V+ +
Sbjct: 133 YGYPTLADDEWLWGGTLADIEQTIKFGVRNTNANSRQSEMPKFGVDGVLKPEQIAAVSDY 192

Query: 205 VVSKLDGRTLPEGAKADVENGQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIYGSSF 264
           VVS      L   A A    G+ ++A NC  CH  +G G  A+GAP L + Q ++Y  + 
Sbjct: 193 VVS------LASKAPAKGSAGETVYAENCAVCHAEDGSGMAAVGAPALNN-QIWLYKGTK 245

Query: 265 AQLQQTIRYGRQGQMPAQAEIQGNDKVHLLAAYVYSL 301
             +   +   + G MPA +E      + +LA YV++L
Sbjct: 246 DAIVAQVNKPKHGSMPAWSERLDASTIKMLAVYVHNL 282