Pairwise Alignments

Query, 313 a.a., cytochrome c oxidase subunit, cbb3-type from Pseudomonas putida KT2440

Subject, 287 a.a., cytochrome-c oxidase, FixP chain from Agrobacterium fabrum C58

 Score =  170 bits (430), Expect = 4e-47
 Identities = 101/277 (36%), Positives = 139/277 (50%), Gaps = 19/277 (6%)

Query: 38  ETMGHSFDGIEEYDNPLPKWWFWLFVGTLAFSVGYLILYPGLGNWKGILPGYENGWTGAN 97
           ET GH +DGI E +NP+P+WW W F  T+ +++GY I YP      G   G   GW+   
Sbjct: 13  ETTGHEWDGIRELNNPMPRWWVWTFYFTILWAIGYTIAYPAWPLINGATQGLL-GWSSRG 71

Query: 98  EWQKEMDKADARFGPIFAKYAAMPVEEVAKDPQ----ALKMGSRLFASNCSVCHGSDAKG 153
           E   E+  A         K A   + E+  DP     AL  G+  F  NC  CHGS A+G
Sbjct: 72  EIAAEIADAKQSQSVYVDKIANSSLAEIQADPTLMQFALSGGAAAFKVNCIQCHGSGAEG 131

Query: 154 AFGFPNLTDNDWRWGGDPETIKTSIMSG---------RHGVMPAWAEVIGDQGVADVAAF 204
             G+PNL D+DW WGG  + I T++  G         R   MPA+ +++    +  VAA+
Sbjct: 132 GQGYPNLNDDDWMWGGSVDDIYTTVKHGIRFADDADTRASEMPAFGDILKSDEIRAVAAY 191

Query: 205 VVSKLDGRTLPEGAKADVENGQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIYGSSF 264
           VVS     + P    A VE G+++FA NC +CHG + KG    GAPNL     ++     
Sbjct: 192 VVSLTGTPSNP----ALVEPGKQLFADNCASCHGEDAKGNREFGAPNLA-DAIWLKAHGE 246

Query: 265 AQLQQTIRYGRQGQMPAQAEIQGNDKVHLLAAYVYSL 301
             +   IR  + G MPA  E  G+  V  LA +V+SL
Sbjct: 247 EGIVAQIRSPKHGVMPAWGERLGDTTVKQLAIFVHSL 283



 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 222 VENGQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIYGSSFAQLQQTIRYG------- 274
           +  G   F  NC+ CHG   +G    G PNL     +++G S   +  T+++G       
Sbjct: 110 LSGGAAAFKVNCIQCHGSGAEG--GQGYPNLNDDD-WMWGGSVDDIYTTVKHGIRFADDA 166

Query: 275 --RQGQMPAQAEIQGNDKVHLLAAYVYSLSQDGSAEAV 310
             R  +MPA  +I  +D++  +AAYV SL+   S  A+
Sbjct: 167 DTRASEMPAFGDILKSDEIRAVAAYVVSLTGTPSNPAL 204