Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 167 a.a., putative RNA polymerase sigma factor FecI from Xanthobacter sp. DMC5

 Score = 68.2 bits (165), Expect = 7e-17
 Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 3/132 (2%)

Query: 39  AEDVVQDAFFRL-STAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSGSEEEGMN 97
           A D+ QD F RL + AP+      +  +YL Q+ RNL++D YR++ +         +   
Sbjct: 30  AADLTQDTFVRLLAAAPRGNGDNPS--AYLHQVARNLSVDLYRRERLVEFVDLPATDFQG 87

Query: 98  VVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKELGVSPTLV 157
           +      PEA   +R  L  +A AL+ELP +TR AFEM+RL     ++IA +L +S +  
Sbjct: 88  LADFAPGPEAVTYDRQRLAIVARALSELPEQTRTAFEMHRLGERTMQEIATDLHLSVSRT 147

Query: 158 NFMIRDALVHCR 169
             +IR A +H R
Sbjct: 148 WALIRRAYLHLR 159