Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 20  DNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHY 79
           D+R  L+    R   C SRAED+ QD F RL    ++ +  + + ++L  I + L  D++
Sbjct: 18  DHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELRAPREPR-AFLMAIAKGLLFDYF 76

Query: 80  RKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLN 139
           R+ A+E  Y    E  +    ++ SPE  H+    L  I   L +L  + R AF   RL+
Sbjct: 77  RRAALEQAYL--TELMLIPESEHPSPEEQHLILEDLKAIDRLLGKLSSKARAAFLYNRLD 134

Query: 140 GVPQKDIAKELGVSPTLVNFMIRDALVHC 168
           G+   +IA+ LGVS   V   +   +  C
Sbjct: 135 GIGHAEIAQRLGVSVPRVRQYLAQGIRQC 163