Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

 Score = 60.8 bits (146), Expect = 1e-14
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 8/156 (5%)

Query: 19  VDNRSILVKIAARITGCRSR-------AEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIV 71
           VD + + +K A  + G  +R       A D+VQ++F RL+  P       +Q  YL++  
Sbjct: 4   VDLKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQ-GYLYRTA 62

Query: 72  RNLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRY 131
            NL IDH R++A     +   E    +  + A  EA  + +     + +AL ELP RT+ 
Sbjct: 63  SNLLIDHIRQEARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQALAELPERTQQ 122

Query: 132 AFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVH 167
            F + R+ G+    +A+ L +S + V   +  AL +
Sbjct: 123 IFRLNRIEGMTHAQVARHLDISDSSVQKHLAKALAY 158