Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 58.2 bits (139), Expect = 8e-14
 Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 18  FVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAID 77
           F+  R +L++   R+    S AED++Q+ + R++ A         +  +++Q  RNLA+D
Sbjct: 10  FLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLE-PFVYQTARNLALD 68

Query: 78  HYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALN----ELPPRTRYAF 133
           H R + ++ + +  E   ++V+   A+P +T  +      + EAL+    +L  R +  F
Sbjct: 69  HLRARRIQAR-TLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLSARQQRIF 127

Query: 134 EMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRKTASR 174
            + RL+G   ++IA +LGVS + V   ++  +  C   A R
Sbjct: 128 ILSRLHGCSYQEIADQLGVSLSTVQKELKLIMAICVGVAER 168