Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 62.4 bits (150), Expect = 4e-15
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 34  GCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAME----LKYS 89
           G R  AEDVV DA+ R+      T   +   ++L++   NL ID +R+ A+     L   
Sbjct: 18  GNRQVAEDVVHDAYVRVLERSSDTP-IEQPRAFLYRTALNLVIDGHRRNALRQVEPLDVL 76

Query: 90  GSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKE 149
            +EE        ++SP   H +   L  +  AL ELPP  R +F + +L G+    IA+ 
Sbjct: 77  DAEER-----FASSSPHTHHDHGQRLELLERALAELPPACRDSFLLRKLEGLTHLQIAER 131

Query: 150 LGVSPTLVNFMIRDALVHCR 169
           L +S  +V   I +A+ HCR
Sbjct: 132 LSISRAMVEKHIVNAMKHCR 151