Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 66.6 bits (161), Expect = 2e-16
 Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 34  GCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSGS-- 91
           GC   A D+  DAF R+    +     K   ++L      L ID  R++ +E  Y  +  
Sbjct: 37  GCSQHAADLAHDAFIRVLMLAE-PQQIKEPRAFLATTAGRLLIDGARRRRIEKAYMEALV 95

Query: 92  ---EEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAK 148
              E+ GM        P A H+   AL  IAE L  LP + R AF + RL+G+   +IA 
Sbjct: 96  IQCEDAGM------PDPAAIHVALQALERIAEMLAGLPAKAREAFLLSRLDGLTYSEIAT 149

Query: 149 ELGVSPTLVNFMIRDALVHC 168
            L VS + V   I  ALVHC
Sbjct: 150 RLDVSASTVKNYISSALVHC 169