Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 176 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 70.9 bits (172), Expect = 1e-17
 Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 2/144 (1%)

Query: 25  LVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAM 84
           L+ +  R    R  A D+  D F R+ + P   +    Q SYL  I R L IDH+R++ +
Sbjct: 22  LLGLLRRRLNDRWDAADLAHDTFIRILSRPPAETDPVRQRSYLATIARGLCIDHWRRRQL 81

Query: 85  ELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQK 144
           E  +  +  E    +    SPE   I    L ++   L  LP +   AF + +L+G+P K
Sbjct: 82  ERTWLQTLAERPEAL--QPSPEQRAIIVETLVEVDAMLARLPKKVSEAFLLAQLHGLPYK 139

Query: 145 DIAKELGVSPTLVNFMIRDALVHC 168
            IA++LGV   +V   +  AL+HC
Sbjct: 140 QIAEQLGVGERMVKKYMAQALLHC 163