Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 166 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 56.2 bits (134), Expect = 3e-13
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 13  PLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVR 72
           P    F ++   L+    R    R +AED+  D F R+  +   +S  +   +YL Q  R
Sbjct: 6   PRRTGFFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRVLESK--SSEVEQPRAYLHQTAR 63

Query: 73  NLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALND-IAEALNELPPRTRY 131
           N+A+D YR+   E +      E  +    N+      ++   L D I  AL+ELP   R 
Sbjct: 64  NIAVDAYRR---EDRREAITLEAFDQRSPNSGDPEHFMHAIQLADSIERALSELPLNCRK 120

Query: 132 AFEMYRLNGVPQKDIAKELGVSPTLV-NFMIRDALVHCR 169
            F   ++ G+ Q++IA+ LG+S  +V  +MIR  L H R
Sbjct: 121 IFIWQKIEGLTQQEIAERLGLSKNMVEKYMIR-TLRHLR 158