Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 63.9 bits (154), Expect = 1e-15
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 5   LSTSKCDSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQL 64
           +S  K D     AF    + ++    + T   S A D+ QD F +        +  +   
Sbjct: 1   MSRPKPDLLSADAFRGFYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRD-RAKVEQPR 59

Query: 65  SYLFQIVRNLAIDHYRKQAME--LKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEAL 122
           ++LFQ+ RNL  DH+RKQ +   +    ++ +      +   P A       L  + E L
Sbjct: 60  AFLFQMARNLLRDHWRKQKVRHTVHSDQADMDAEPATDEQNDPMAAVQRLQRLEQLKEVL 119

Query: 123 NELPPRTRYAFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRK 170
            EL PR R A  ++R  G+ Q  IA+ +G+S ++V   I  AL+HC++
Sbjct: 120 AELSPRRREALMLHRFEGLSQAQIAERMGISTSMVEKHIAFALLHCKR 167