Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 47/147 (31%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 31  RITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSG 90
           R  G R  A DV QD F RL  + +     K   SYL QI RNL ID +R+  +E  Y  
Sbjct: 28  RRLGDREHAADVAQDTFLRLLVSGRFPGD-KESRSYLAQIARNLVIDQWRRLRIERAYLE 86

Query: 91  SEEEGMNVVVQNASPEATHINRAAL-----NDIAEALNELPPRTRYAFEMYRLNGVPQKD 145
           S       +     PE+  +   AL       I   L+ +P   R AF + +  G+    
Sbjct: 87  S-------IAHLPEPESPSLETRALILETLMQIDAMLDRMPDNVRQAFLLSQFEGLSYAQ 139

Query: 146 IAKELGVSPTLVNFMIRDALVHCRKTA 172
           IA+ LGV+ + V   +  A+V C + A
Sbjct: 140 IAERLGVTVSSVQKYMTRAIVACYQVA 166