Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 178 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 13  PLLQAFVDNR-SILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIV 71
           P L+ F+ +R   L +  AR  G   +A D +QD + RL +   I    +   SYL ++ 
Sbjct: 7   PALRNFLVSRYDELKQRLARRLGNSDQASDALQDTWLRLESRDDI-DGVRDPASYLLRVA 65

Query: 72  RNLAIDHYRKQAMELKYSGSEEEGMNVVVQNA-----SPEATHINRAALNDIAEALNELP 126
            NLA D   KQ        +  E ++ ++++A      P     +R+ +  +A  +  +P
Sbjct: 66  VNLAYDQLGKQGRL-----ATPEEIDALLEDAPDPAPGPSQIAEDRSEMAALAALIARMP 120

Query: 127 PRTRYAFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRKTASR 174
           PR R    M R   +PQ+++A  LG+S   V   ++DA   C     R
Sbjct: 121 PRRRQVLVMVRWEHLPQREVAARLGISLRTVEKELKDAHDFCAARMGR 168