Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 59.7 bits (143), Expect = 3e-14
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 31  RITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSG 90
           R  GC   A D+ QD F R+   PQ+  + +   +YL  + + +  +H+R+QA+E  Y  
Sbjct: 29  RRLGCSHSAADLAQDTFVRVLLRPQVLPTLREPRAYLSTLAKGVVSEHWRRQALERAY-- 86

Query: 91  SEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKEL 150
            E   +       SPE        L++I   L+ + P+ R AF + +L G+    IA+ L
Sbjct: 87  LETLALLPEPLALSPEERLSLLQTLDEIDAMLDGMSPKAREAFVLSQLEGLTYAAIAERL 146

Query: 151 GVSPTLVNFMIRDALVHC 168
            +S   V   ++     C
Sbjct: 147 QISERTVKRYMQQGFERC 164