Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 62.4 bits (150), Expect = 4e-15
 Identities = 46/141 (32%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 34  GCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSGSEE 93
           G    A D +Q+A+ R+     + S+ +   +YLF+I  N+A D  RK    L   G  E
Sbjct: 29  GSEDLANDALQEAYLRVENT-NVRSAVRYPSAYLFRIALNVAEDQ-RKSNSRLLSVGEVE 86

Query: 94  EGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKELGVS 153
           E  ++  + A P      R  L  +  AL ELP R R      R++ +P KDIA   GVS
Sbjct: 87  ELYDMADEMADPARGAEARNELEALERALAELPRRRRAIVLAARVDEMPHKDIAARYGVS 146

Query: 154 PTLVNFMIRDALVHCRKTASR 174
              V   +R  L HC +   R
Sbjct: 147 ARTVEKELRAGLEHCCERLGR 167