Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 58.9 bits (141), Expect = 4e-14
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 34  GCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSGSEE 93
           GC   A D+  D F RL +  +  ++ + + +YL  I   L +D +R++A+E  Y   + 
Sbjct: 33  GCSHNAADLAHDTFVRLLSKTEPVAAAEPR-AYLATIAHGLVVDFHRRRALERAYL--DT 89

Query: 94  EGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKELGVS 153
                  Q  S EA  I   AL  I   L+ + P  R AF + +L+G+   +IA  LGVS
Sbjct: 90  LAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQAFMLSQLDGLTYAEIAARLGVS 149

Query: 154 PTLVNFMIRDALVHC 168
              VN  +  AL HC
Sbjct: 150 VRTVNNYMLKALEHC 164