Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 7/144 (4%)

Query: 18  FVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAID 77
           F  NR+ L++   R  G    AED++QD + +L             L YL+++  NL +D
Sbjct: 23  FFQNRAALLRFL-RARGAGEDAEDLLQDMWMKLEAKD--LGPVADPLPYLYRMANNLMLD 79

Query: 78  HYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEA----LNELPPRTRYAF 133
            YR      +      EG   V+ + + +     R  LN   E     L +L PR    F
Sbjct: 80  RYRSATRRERREQDWAEGAGGVMADPNDDLAVDERMILNQRLEQARGILADLGPRVELVF 139

Query: 134 EMYRLNGVPQKDIAKELGVSPTLV 157
             +R+ GV Q+ IA+ELGVS T V
Sbjct: 140 RRFRIEGVGQRLIAEELGVSLTTV 163