Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 70.5 bits (171), Expect = 2e-17
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 15  LQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNL 74
           +Q F   R+ +  + +R  GCR+ A D+VQ+ F R    P++    +A  +YL +   NL
Sbjct: 22  VQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEV--KVEALDTYLLRCAGNL 79

Query: 75  AIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFE 134
           AIDH R ++   + + +        +  A  +A  ++   L  I   L  LP RTR  F 
Sbjct: 80  AIDHLRSESSRERVAEAAVPVSEASLAQAPEQAVEVDHD-LQRIEATLRALPERTRQIFL 138

Query: 135 MYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRKTASRQA 176
           + R++G    +IAK + +S + V   +  AL  C+ + +  A
Sbjct: 139 LNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAEPA 180