Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 49/158 (31%), Positives = 77/158 (48%)

Query: 12  SPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIV 71
           S LL +F ++   L++   R    R RA DV Q+ + +L    +         S++F++ 
Sbjct: 7   SGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVA 66

Query: 72  RNLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRY 131
            NLAID  R++          +    V     +PEA  + R  L  + +AL +LP   R 
Sbjct: 67  GNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQ 126

Query: 132 AFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCR 169
           A  + R+ G+ QK +A+ LGVS ++V   I  AL HCR
Sbjct: 127 ALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCR 164