Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 63.2 bits (152), Expect = 2e-15
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 18  FVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAID 77
           F+  R  L++   R+ G  S AED++Q+ + R+S A         +  ++FQ  RNLA+D
Sbjct: 10  FLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIE-PFVFQTARNLALD 68

Query: 78  HYRKQAMELKYSGSE--EEGMNVVVQNA--SPEATHINRAALNDIAEALNELPPRTRYAF 133
           H R + ++ +    +  +E ++ V   A  S +A H  +  L  ++ +LN+L  R +  F
Sbjct: 69  HLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQL-LKHLSVSLNQLSERQQRIF 127

Query: 134 EMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRKTASR 174
            + RL+G    +IA++L VSP+ V   ++  +  C   A R
Sbjct: 128 ILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVAER 168