Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 63.9 bits (154), Expect = 1e-15
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 16/161 (9%)

Query: 16  QAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLA 75
           + F+D+   L+    R    R +AED+  DAF R+   P+     +   +YL Q  RN+A
Sbjct: 5   KGFLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPR--EQVEQPRAYLHQAARNIA 62

Query: 76  IDHYRK----QAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAE-ALNELPPRTR 130
           +D +R+    QA+E +   + EEG      +  PEA +++   L D  E AL ELP   R
Sbjct: 63  VDGFRREDRRQALERE---AFEEG---ATGSGDPEA-YVHALELADSVERALAELPLNCR 115

Query: 131 YAFEMYRLNGVPQKDIAKELGVSPTLV-NFMIRDALVHCRK 170
             F   +L G+ Q +IA+ +G+S  +V  +MIR  L H R+
Sbjct: 116 QVFIWQKLEGLTQAEIAERMGLSKNMVEKYMIR-TLRHLRE 155