Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 67.4 bits (163), Expect = 1e-16
 Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 7/137 (5%)

Query: 34  GCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSGSEE 93
           GC   A D+ QD F RL  A Q+ S  K   +YL  I R L ID +R++A+E  Y    +
Sbjct: 32  GCSEHAADLAQDTFVRLLRARQM-SPLKEPRAYLSSIARGLMIDQFRRRALERAY----Q 86

Query: 94  EGMNVVVQNASP--EATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKELG 151
           EG+  + +   P  E   +   +L  +  AL +L PR R AF + +L+G+    +A+ LG
Sbjct: 87  EGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLAQLDGLSIVQVAQRLG 146

Query: 152 VSPTLVNFMIRDALVHC 168
           VS   V   +  AL  C
Sbjct: 147 VSRATVERDLAKALGAC 163