Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 39  AEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKYSGSEEEGMNV 98
           A ++ QD F RL + P++ +  +   +YL ++ RN  +D +R++ +E  Y     E +  
Sbjct: 39  AAELAQDVFVRLLSKPRVFNDHEHARAYLGRMSRNACVDFWRRRRVEQAYL----EVLAA 94

Query: 99  VVQNASPEATH--INRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIAKELGVSPTL 156
             +  +P   H  +    L  +      +P R   AF M +L G+ Q++IA++LGVS   
Sbjct: 95  QPEQLAPSLEHQAVILETLEQLQAMFERMPQRVAEAFSMAQLQGMKQREIAEQLGVSERS 154

Query: 157 VNFMIRDALVHC 168
           VN  +  A+  C
Sbjct: 155 VNSYLAQAMYQC 166