Pairwise Alignments

Query, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 71.2 bits (173), Expect = 9e-18
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 20  DNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHY 79
           D+R  L+    R   CR RAED+ QD F RL    Q+ +  + + ++L  + + L  DH+
Sbjct: 18  DHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPR-AFLAAVAKGLMFDHF 76

Query: 80  RKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLN 139
           R+ A+E  Y    E  +    +  SPE  H+    L  I   L +L  + R AF   RL+
Sbjct: 77  RRAALEQAYLA--ELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLD 134

Query: 140 GVPQKDIAKELGVSPTLVNFMIRDALVHC 168
           G+   +IA+ LGVS + V   I   +  C
Sbjct: 135 GMGHAEIAERLGVSVSRVRQYIAQGMRQC 163