Pairwise Alignments

Query, 552 a.a., pyoverdine ABC export system, fused ATPase and permease components from Pseudomonas putida KT2440

Subject, 582 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Dickeya dianthicola ME23

 Score =  108 bits (270), Expect = 6e-28
 Identities = 130/576 (22%), Positives = 242/576 (42%), Gaps = 60/576 (10%)

Query: 12  LFGLLKPFWPLVTVSIILGMVGGLSVTALLATINSALHSDTGLTQGVVLGFAGLCLLALF 71
           L+ ++ P+   +TV+ +  +V     T +L+ +   L    G     VL +  L ++ L 
Sbjct: 16  LWPMISPYKAGLTVAAVALVVNAAGDTLMLSLLKPLLDDGFGKADRSVLVWMPLAIIGLM 75

Query: 72  -----SSICSDMGTNWVGQHIIARLRRELGEKVLAAPIDQIERYRSHRLIPVLTHDVDTI 126
                SS  S     WV   ++  +RR L   ++  P+   ++  +  L+  +T+D + +
Sbjct: 76  IMRGISSYISSYCVAWVSGKVVMNMRRRLFSHIMGMPVSFFDQQSTGTLLSRITYDSEQV 135

Query: 127 ---SDFAFVFAPLAVSLTVTVGCLGYLAHLSIPMFLVILVAIGIGSV------MQFVARS 177
              S  A V      +  + +  L +     + + LV++  I   S+       + +++S
Sbjct: 136 AASSSNALVTVVREGASIIGLFVLMFWYSWQLSLILVLIAPIVSYSMRVVSKRFRSISKS 195

Query: 178 WGVRGFESAREAEDELQKHYSAIAEGAKELRIHR--PRRKRMFQHGIQDTANRICATQVR 235
                 +    AE  L+ H   +  G + + + R      RM Q G++            
Sbjct: 196 MQNTMGQVTTSAEQMLKGHKEVLIFGGQTVEVERFDAVSNRMRQQGMK-------MVSAS 248

Query: 236 SINTFVIAKTLGSMLFFVVIAVALAMQSLWPTGDKSVTSGFVLVLLYMKGPLEHLISTLP 295
           SI+  V+       L FV+ A +      +P+  +++T+G + V+      +  L+  L 
Sbjct: 249 SISDPVVQLIASLALAFVLYAAS------FPSVMETLTAGTITVVF---SSMFTLMRPLK 299

Query: 296 IISKAQIAFRR-IAELSRQFSSPEPHLLLDD-TRAADKALHTLQLQDVSYTFPRVEGSEP 353
            ++     F+R +A     F+  +     D  TR    A   ++ + V++T+P   G E 
Sbjct: 300 SLTNVNAQFQRGMAACQTLFTILDMEQEKDTGTRVLAHAKGNIEFRQVNFTYP---GKET 356

Query: 354 FHLGPVNLSIKQGDIVFIVGENGCGKTTLIKLLLGLYAPQQGTISLDGKPVTAENRDDYR 413
             L  ++L I  G  V +VG +G GK+T+  L+   Y  Q G I LDG  +        R
Sbjct: 357 LALKNISLHIPPGKTVALVGRSGSGKSTIANLITRFYDIQAGEILLDGHDLRDYTLSSLR 416

Query: 414 QLFTTIFADYYLFDDVIQ-------GDRPVPADASR---------YLERLEIAHKVSI-R 456
                +  + +LF+D I        GDR    D  R         ++ RLE      I  
Sbjct: 417 SQVALVSQNVHLFNDTIANNIAYACGDRYSREDIERAAKMAHAMDFIGRLEQGLDTVIGE 476

Query: 457 DGVFSTTDLSTGQRKRLALVSAWLEERPVLVFDEWAADQDPTFRRIFYTELLPDLKRLGK 516
           +GV     LS GQR+R+A+  A L + P+LV DE  +  D    R     L  D  +  +
Sbjct: 477 NGVL----LSGGQRQRIAIARALLRDCPILVLDEATSALDTESERAIQAAL--DELQKNR 530

Query: 517 TIIVISHDDRYFDVADQLIHMAAGKVQQENRVADCI 552
           T +VI+H     + AD+++ +  G++ +  + ++ +
Sbjct: 531 TALVIAHRLSTIEKADEILVVEDGQIIERGQHSELL 566