Pairwise Alignments

Query, 392 a.a., ABC export system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score = 90.9 bits (224), Expect = 6e-23
 Identities = 94/356 (26%), Positives = 158/356 (44%), Gaps = 35/356 (9%)

Query: 34  AQPVSTVAVTRADIESSVTALGTLQPRRYVDVGAQASGQIRNLHVEVGDQVHKGQLLVEI 93
           A PVS   V  ++I +     G L+    VDV ++ +G ++ +H   G  V +G LLV I
Sbjct: 52  ATPVSVATVASSEINAWDEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGDLLVTI 111

Query: 94  DPSTQQAKLDAGRFSIDNLKAQLAEQRAQLKLAQQQLKRQRDLAAVGATREEDLQTAEAQ 153
           DP+   A+++     + + +A+ +  R++    Q++ KR  D  A+ A RE D      +
Sbjct: 112 DPAPYAAEVERAEAQVASAQARQSFSRSE----QERAKRLWDDKAI-AQREFD-----ER 161

Query: 154 LNVTQARIDMYQAQIRQANASLRSDEAELGYTRIFAPMDGTVVAVDAREGQTLNAQQQTP 213
           +N  +       A +R A ASL+S    LGYT++ AP+ G +  ++   G  + A    P
Sbjct: 162 VNAGREA----DANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEVTVGNLVAAGPGAP 217

Query: 214 LILRIAKLSPMTVWAQVSEADIGKIQPGMTAYFTTLAGGKRRWTSTVRQVLPIPPKPLDQ 273
           ++  +  +SP+       E  I       T     L  G    +S   Q+  IP +    
Sbjct: 218 VLTTLVSVSPIYASFDADEQVI-------TRALKDLPTG----SSARGQIESIPVQM--G 264

Query: 274 TSQGGGSPASATAGATGSQVVQYT----VLLDVDNPDGALMAEMTTQVFFVVGQASQVLS 329
           T+   G+P +       +QV   +    V    DN DGAL+     ++     ++   L 
Sbjct: 265 TAGLDGTPFTGKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRMGQARSDSALL 324

Query: 330 APLAALDDSDNEGLRLAQVFGRDGKVEQRKVRTGLS-DRLRVQILDGLSEGDRLVI 384
               A+    N+  +   V G D K   R+V  G S + LRV +  GL  GDR+++
Sbjct: 325 VSERAIGTDQNK--KFVMVVGEDSKATYREVTLGASINGLRV-VSKGLKAGDRVIV 377