Pairwise Alignments

Query, 392 a.a., ABC export system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  104 bits (259), Expect = 5e-27
 Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 30/353 (8%)

Query: 36  PVSTVAVTRADIESSVTALGTLQPRRYVDVGAQASGQIRNLHVEVGDQVHKGQLLVEIDP 95
           PV  V +    +  +    G ++P R  +V A+  G + +   E G  V  G +L +IDP
Sbjct: 37  PVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPGIVLHKRFEEGADVKAGDVLFQIDP 96

Query: 96  STQQAKLDAGRFSIDNLKAQLAEQRAQLKLAQQQLKRQRDLAAVGATREEDLQTAEAQLN 155
           +  +A L   R   D  +AQ  +Q AQ +     +KR   L  + A  ++D  +A A+L 
Sbjct: 97  APFKAAL--ARAEADLARAQAVQQEAQAR-----VKRYEPLVKIEAVSQQDFDSATAELR 149

Query: 156 VTQARIDMYQAQIRQANASLRSDEAELGYTRIFAPMDGTVVAVDAREGQTLNAQQQTPLI 215
                     A +R A A +++    LGY  + AP+ G +    A EG  L  Q +  L+
Sbjct: 150 SA-------GAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEG-ALVGQGEATLM 201

Query: 216 LRIAKLSPMTVWAQVSEADIGKIQPGMTAYFTTLAGGKRRWTSTVRQVLPIPPKPLDQTS 275
            RI +L P+ +    S AD  +++  +      L+   +R T+ V            ++ 
Sbjct: 202 ARIQQLDPIYIDFTQSAADALRLRQALKD--GALSADSQRLTAQVEGT------DFQRSG 253

Query: 276 QGGGSPASATAGATGSQVVQYTVLLDVDNPDGALMAEMTTQVFFVVGQASQVLSAPLAAL 335
           +   +  S   G TG  +++       DN DG L+  M  +V    G  +  +  P  A+
Sbjct: 254 ELMFTDVSVDRG-TGQVILRGR----FDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAV 308

Query: 336 DDSDNEGLRLAQVFGRDGKVEQRKVRTGLSDRLRVQILDGLSEGDRLVIGAPA 388
               +   R+  +   +G  E R VRTG+    R QI +GL  GD++++G+PA
Sbjct: 309 QRGSDGQARV--LVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPA 359