Pairwise Alignments

Query, 392 a.a., ABC export system, membrane fusion protein from Pseudomonas putida KT2440

Subject, 432 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  123 bits (308), Expect = 1e-32
 Identities = 92/336 (27%), Positives = 152/336 (45%), Gaps = 23/336 (6%)

Query: 3   RSTHTRRRLLLGG-LGLLGLGSLLAWTSLPFG-AQPVSTVAVTRADIESSVTALGTLQPR 60
           R   +RR L +   + L+G G    + S   G A   +T    + D+   VT+ G++QP 
Sbjct: 29  RKKKSRRFLYIAAAIVLIGGGLGYYYQSRAAGVAYNYTTEPARQGDLSVIVTSTGSVQPT 88

Query: 61  RYVDVGAQASGQIRNLHVEVGDQVHKGQLLVEIDPSTQQAKLDAGRFSIDNLKAQLAEQR 120
             VD+ ++ SG +R ++V     V  G +L E+D +  +A + + R  + + KA + + R
Sbjct: 89  DQVDISSELSGTVRKVNVTYNTPVKSGDILAELDTNKLEADVQSARAKLASAKANVLKAR 148

Query: 121 AQLKLAQQQLKRQRDLAAVGATREEDLQTAEAQLNVTQARIDMYQAQIRQANASLRSDEA 180
           A L  A+  ++R R L     + ++DL  A+   +   A + + +A +  A A LR  E 
Sbjct: 149 ADLGSAKTSMERLRSLVQSRVSSQQDLDAAQFTHDAAAATLQVNEATVLSAEADLRLAEV 208

Query: 181 ELGYTRIFAPMDGTVVAVDAREGQTLNAQQQTPLILRIA-KLSPMTVWAQVSEADIGKIQ 239
            LG  +I +P+DG ++      G T+ +    P++  IA  L  M +   V EAD+GK++
Sbjct: 209 NLGKAKIVSPIDGVILTRSVDPGATVASSLNAPVLFTIAGDLRHMELQVSVDEADVGKVE 268

Query: 240 PGMTAYFTTLAGGKRRWTSTVRQVLPIPPKPLDQTSQGGGSPASATAGATGSQVVQYTVL 299
            G  A F   A   R + + +  V                      A  T S VV Y  +
Sbjct: 269 TGQKATFNVDAYPDRSFPAEIETV--------------------RFASETVSNVVTYKGI 308

Query: 300 LDVDNPDGALMAEMTTQVFFVVGQASQVLSAPLAAL 335
           L VDN +  L   MT     +V +    L  P +AL
Sbjct: 309 LTVDNAELLLRPGMTATANIIVEEIKDTLLVPNSAL 344