Pairwise Alignments

Query, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 69.3 bits (168), Expect = 3e-17
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 10/156 (6%)

Query: 1   MEHYYRELVSFLSA----RLGSRQAAEDVAHDAYLRVLERTGS-EQIEHPRAFLYRTALN 55
           M  +Y E   +LSA    RLG   +A D+A D ++RVL R      +  PRA+L   A  
Sbjct: 12  MHTFYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLREPRAYLSTLAKG 71

Query: 56  LVVDRHRRQLVRQA--EPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDS 113
           +V +  RRQ + +A  E L  L     L   E    L L Q L  +   LD +S   R++
Sbjct: 72  VVSEHWRRQALERAYLETLALLPEPLALSPEER---LSLLQTLDEIDAMLDGMSPKAREA 128

Query: 114 FLLRKIEGLSHQQIAERLGISRSLVEKHIVNAMKHC 149
           F+L ++EGL++  IAERL IS   V++++    + C
Sbjct: 129 FVLSQLEGLTYAAIAERLQISERTVKRYMQQGFERC 164