Pairwise Alignments

Query, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  104 bits (260), Expect = 7e-28
 Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)

Query: 4   YYRELVSFLSARLGSRQAAEDVAHDAYLRVLE-RTGSEQIEHPRAFLYRTALNLVVDRHR 62
           YYREL++F +  L +R AA D+  ++Y RVL     S  I  PRA LY+TA +++VD+HR
Sbjct: 5   YYRELLNFCARALRNRDAAADIVQESYARVLAIERSSVPIGDPRALLYQTARHVMVDQHR 64

Query: 63  RQLVRQAEPLDAL-DADSRLHSSELQHDLQLDQRLALMQ--KALDELSRPCRDSFLLRKI 119
           R L+R+ + L AL +++  +  + LQ D  L    A+      ++ L   CR++F+L   
Sbjct: 65  RNLLREHDDLAALSESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREAFVLHVF 124

Query: 120 EGLSHQQIAERLGISRSLVEKHIVNAMKHCRVRMRQ 155
           +GLSH +IA R+G S S++EKH+      CR   RQ
Sbjct: 125 DGLSHAEIAARMGASVSMIEKHVARGRLACRACERQ 160