Pairwise Alignments

Query, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 73.9 bits (180), Expect = 1e-18
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 8/149 (5%)

Query: 8   LVSFLSARLGSRQAAEDVAHDAYLRVL-------ERTGSEQIEHPRAFLYRTALNLVVDR 60
           L  +L  +LG+   A D+A D +LR+L       E+ G  Q+  PRA+L   A  L+ + 
Sbjct: 23  LQGWLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQGDWQLREPRAYLTVVAKRLLANL 82

Query: 61  HRRQLVRQAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIE 120
           +RR+ + QA   +AL A     +   +    + + L  +   LD L+ P R +FL+ ++E
Sbjct: 83  YRRRSLEQAY-FEALSALPEPQAPSPEQQAIILETLQEIDAMLDGLAPPVRRAFLMAQLE 141

Query: 121 GLSHQQIAERLGISRSLVEKHIVNAMKHC 149
           GL + +IA  LG+S   V++++  AM  C
Sbjct: 142 GLGYAEIAATLGVSERTVKRYMAEAMARC 170