Pairwise Alignments

Query, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  105 bits (261), Expect = 5e-28
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 10/162 (6%)

Query: 4   YYRELVSFLSARLGSRQAAEDVAHDAYLRVL-ERTGSEQIEHPRAFLYRTALNLVVDRHR 62
           YYREL+ FL   +  +  A D+  ++Y RVL  +   E I  PRA LYRTA NL++DRHR
Sbjct: 5   YYRELLHFLGRSVKDQHTAADLVQESYARVLVAQKNGEDIVDPRALLYRTARNLLIDRHR 64

Query: 63  RQLVRQAEPLDALDADSRLHS-SELQHDLQLDQRLALMQK--------ALDELSRPCRDS 113
              VR+A   + +D D    + S+L      +  +A+  +         + EL   CR +
Sbjct: 65  HDQVRRAALGETVDTDEDEETLSQLAAPPAFEPEVAVASRQGVQALLTTIGELPVRCRQA 124

Query: 114 FLLRKIEGLSHQQIAERLGISRSLVEKHIVNAMKHCRVRMRQ 155
           F+L K EGLSH ++AE +GI+  +VEKHI   ++ CR  + Q
Sbjct: 125 FMLHKFEGLSHAEVAEEMGITVKMVEKHIKMGLQACRACLEQ 166