Pairwise Alignments

Query, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 174 a.a., putative RNA polymerase sigma factor FecI from Methylophilus sp. DMC18

 Score = 81.3 bits (199), Expect = 8e-21
 Identities = 50/162 (30%), Positives = 92/162 (56%), Gaps = 11/162 (6%)

Query: 3   HYYRE----LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEH---PRAFLYRTALN 55
           H+Y+     L  +L+ ++G    A D+A D ++++L +   E ++H   PR +L + A  
Sbjct: 11  HWYQAHHHWLCCWLNKKVGCTHHAADLAQDTFVKLLLK--QEALQHVYTPRIYLLQIAKG 68

Query: 56  LVVDRHRRQLVRQAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFL 115
           L++D+ RRQ + Q+  L+AL  +     S+ Q  + + + L  +   L  L+   + +FL
Sbjct: 69  LMIDQWRRQALEQSY-LNALSQEEPACISQEQQAM-ITEALLEVDAMLSRLNPKAKAAFL 126

Query: 116 LRKIEGLSHQQIAERLGISRSLVEKHIVNAMKHCRVRMRQWE 157
           L +I G  +Q+IA+RL +S  +V+K++  AM HC +  RQW+
Sbjct: 127 LAQIHGFQYQEIADRLAVSERMVKKYMATAMMHCLMLRRQWQ 168