Pairwise Alignments

Query, 530 a.a., Transcriptional regulator, GntR family from Pseudomonas putida KT2440

Subject, 468 a.a., Uncharacterized HTH-type transcriptional regulator YdcR from Escherichia coli ECRC101

 Score =  315 bits (807), Expect = 2e-90
 Identities = 174/464 (37%), Positives = 265/464 (57%), Gaps = 1/464 (0%)

Query: 57  YQRIAQQLADDIRRGVYQPGERVPSVRKMSAQLNVSHATVLQAYANLEDQGLIRARPQSG 116
           YQ++A+QL + I  G++QPG+R+PS+R   A   +S  TV  AY  LE QG I ARPQS 
Sbjct: 4   YQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARPQSS 63

Query: 117 YYVHQTPALTAQTPDIARVERPGLVTRASIIQQVLTEARRDGVFPFGAAVPHVDYLPVRA 176
           YYV        + P I  V R   V   + I  +L  +R   V PF +A P     P++ 
Sbjct: 64  YYVAPQAIKMPKVPVIP-VTRDEAVDINTYIFDMLQASRDPSVVPFASAFPDPRLFPLQQ 122

Query: 177 LHQQIAKVTRFHSPRAFSYMFSPGFEPLRRQIAIRMRDAGVLVDPREVIVTHGCVDALQM 236
           L++ +A+V++  +  +      PG   LR+ IA R    G+ + P E+++T G ++AL +
Sbjct: 123 LNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYALQGITISPDEIVITAGALEALNL 182

Query: 237 SLRVLTRPGDLIAAESPTYYGLLQLADLLGLKVIEIPSDPSTGISLEALQLAANQWSIKA 296
           SL+ +T PGD +  E+P +YG LQ  + L LK + + +D   GI L+AL+LA  ++ +KA
Sbjct: 183 SLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPVKA 242

Query: 297 LVLTARLSNPLGGTVPEERQKQLLRLASDFDIQIIEDDIYGELMFEQGKTKALKAFDRLD 356
             L     NPLG T+  +++ QL+ L + +++ +IEDD+Y EL F + K    KA+DR D
Sbjct: 243 CWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDRHD 302

Query: 357 RVIYCSSFSKTLSPGVRVGWMIAGRYQDEIQRLQTFTTHSACSVTQMGVAAYLENGGYDR 416
            V++CSSFSK L PG R+GW+ AG++  +IQRLQ  +T S  S  Q+ +  YL    YD 
Sbjct: 303 GVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLSTRRYDA 362

Query: 417 HLRYIRQEYRKNLSAYQLAVQQHFPEGTQMTRPTGGFILWVSLPGRVNTQELHVRALEQG 476
           HLR +R++  +       A+ ++ P   ++     G+ LW+ LP  ++  EL + AL   
Sbjct: 363 HLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYFLWLELPEPLDAGELSLAALTHH 422

Query: 477 ISIAPGLIFSNTEQFNHCVRLNCGIPWNKEAERAVITLGLLAQQ 520
           ISIAPG +FS  E ++   R N    W +  E+AV  LG L Q+
Sbjct: 423 ISIAPGKMFSTGENWSRFFRFNTAWLWGEREEQAVKQLGKLIQE 466