Pairwise Alignments

Query, 643 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 917 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

 Score =  258 bits (660), Expect = 6e-73
 Identities = 186/574 (32%), Positives = 290/574 (50%), Gaps = 48/574 (8%)

Query: 9   IHTRTQIISLGPALLLTLLLISFFTFVRIQDLRQELNHTGQLIANQLAPASEYGVISGNN 68
           I  R  +++L P  L+  LL  +FT++++ +L+ +L   G++IA QLAP     + + N 
Sbjct: 7   IKGRVLLLTLLPTSLMASLLGGYFTWMQLSELQTQLLQRGEMIAEQLAPLVAPALSARNT 66

Query: 69  EVLEGLMRATLSIPHVRFLEVQDSRNHILVY----------VEQSDESANR-AQQVEVFQ 117
           E+LE +   +L  P VR +         L +          V  S     R       + 
Sbjct: 67  ELLERIATQSLEQPDVRAVSFLSPERAPLAHAGPTMLNQPPVGNSSHLLQRTGNDATRYL 126

Query: 118 APIRLQQIRLDNDFLQQGKATSPAIGDDYLGRVIVGMSDDAFSQRQQEIVIKAGILALFA 177
            P+  +   L  + +       P   D  LG V V +S +    R    +  + +L    
Sbjct: 127 LPVFGRHRNLAGELI-------PDEADRLLGWVEVELSHNGMLLRGYRSLFASLLLIAIG 179

Query: 178 LLFTFLLARRLALSLAKPISDMGHAVKAIQQGEYNTPLPVVDDSELGHLARHINNLASAL 237
           L+ T  LA R++ ++  PI  +  AV  ++ G   T LP +   EL  LA  IN +A  L
Sbjct: 180 LICTAALALRISRTINSPIGQIKQAVAQLKDGNLETRLPPLGSQELDQLASGINRMAETL 239

Query: 238 EQASDEQKQAI------------------AELIQAREEAEQANRAKSDFLAMMSHELRTP 279
           + A +E + +I                   EL  AR+EA +A+R KS+FLA MSHE+RTP
Sbjct: 240 QNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTP 299

Query: 280 MNGVLGMLQLLETTPLSSEQADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFN 339
           +NG+LG   LL+ + L+  Q DY     +S  +LL +IN+ILDFS+IE   L L+ I FN
Sbjct: 300 LNGILGFTHLLQKSELTPRQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFN 359

Query: 340 LGELITNSVQSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLIGNALKFTER 399
           L +L+ +++     +A  + L L + L      L + GDP R++QIL NLI NA+KFT  
Sbjct: 360 LRDLLQDTLTILAPAAHAKQLEL-VSLVYRDTPLALVGDPLRLKQILTNLISNAIKFTRE 418

Query: 400 GQVQVDARWQVLDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGLGL 459
           G +   A  +      + L  SV+DTGIG+ S  +  +F AF QAD+S+SR+ GGTGLGL
Sbjct: 419 GTIVARAMIEDEQEDSVQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGL 478

Query: 460 SIARTLAERMGGKLRGESREGLGSTF--TLEMPLALANPAPVPLTPPTTVRTTVPDNDQV 517
            I++ L E+MGG++  +S  G GS F  +L +P    +   +P  P            +V
Sbjct: 479 VISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTRDDVEDLPSAPLL--------GHRV 530

Query: 518 LLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAV 551
            ++E++ + R  ++  L   GL V T  + LE++
Sbjct: 531 AVLENHELARQALQHQLEDCGLEV-TPFNSLESL 563



 Score = 99.8 bits (247), Expect = 5e-25
 Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 6/142 (4%)

Query: 493 LANPAPVPLTPPTTVRTTVPDNDQVLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVE 552
           L +P P    P   + +  P   +VL V+DNP N  +V+ +L  +G  V   E G  A++
Sbjct: 648 LISPRPSRSEPGEPLSSRAP---RVLCVDDNPANLLLVQTLLEDMGARVRAVESGYAAID 704

Query: 553 LVGRQRFAAVLMDCRLPHLDGYEATRRIRQLP---NGAGLPIIALTANALQGDRERCMAA 609
            V +  F  VLMD ++P +DG ++T  IRQ     +G  LP++ALTA+A+  ++   + +
Sbjct: 705 AVKQDTFDLVLMDVQMPGMDGRQSTEAIRQWESERSGTPLPVVALTAHAMANEKRALLQS 764

Query: 610 GMDDYLSKPLRRTELQQVLQRW 631
           GMDDYL+KP+   +L QV+ +W
Sbjct: 765 GMDDYLTKPISERQLAQVVLKW 786