Pairwise Alignments

Query, 534 a.a., microcin C transporter - ATP binding subunit from Pseudomonas putida KT2440

Subject, 554 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  403 bits (1035), Expect = e-116
 Identities = 234/530 (44%), Positives = 330/530 (62%), Gaps = 8/530 (1%)

Query: 2   SEQNLIEVRDLAVEFVTGDQVNRVVDGVSFDIRKGETLALVGESGSGKSVTAHSILRLLP 61
           S + ++ V  L +E   G     +V  +SF+++ GE LA+VGESGSGK++ A +IL+LLP
Sbjct: 8   SARPVLSVEHLKIELRHG--ARPLVHDLSFEVKPGEFLAVVGESGSGKTMAARAILQLLP 65

Query: 62  YPLARHPSGSIRYEGKDLLQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQINEILL 121
            P      G I ++G+DL  +  K ++ IRG  I M+FQEPM SLNP+H I +Q+ E L 
Sbjct: 66  -PGILQTGGRIVFDGEDLAARDPKAMRPIRGPGIGMVFQEPMVSLNPVHRIGEQMAEGLR 124

Query: 122 LHKGLTGKEATARTLELLDMVGIPEPRKRLKALPHELSGGQRQRVMIAMALANEPELLIA 181
           +H  L   E  AR L++L  V I +P + + A PHE SGG RQR+M+A  +  +P LLIA
Sbjct: 125 MHTQLPAAEIRARILDMLRRVQIADPERCMHAYPHEFSGGMRQRIMLASVMLLKPRLLIA 184

Query: 182 DEPTTALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQRGQIVEQAE 241
           DEPTTALD   Q ++L+L+  L    G A+LLI+H+L LV R A R  V+++GQ+VE  +
Sbjct: 185 DEPTTALDTLSQREVLDLMVGLARDNGTAVLLITHNLGLVGRYAQRAIVLEKGQLVETGD 244

Query: 242 CATLFSSPQHHYTQMLINAEP---SGLPAHNPVGAPLLEVDDLKVWFPIKKGFLQRTVDH 298
              +  +P+  YT+ L++A P   +  P  +    PL++V  L V F   +  L +    
Sbjct: 245 VPGILVAPKQPYTRKLVDALPRRQAAKPQGDAPRQPLVQVRSLCVSFSGARAGLFKRHAP 304

Query: 299 VKAVDGVNFSLPQGQTLGIVGESGSGKSTLGLAILRLISSQGG-IRFHGQNLEGLNQKAV 357
           V  +D ++  +  G+ + +VG SGSGK+TLG AILRL  SQ G I F G+++    + A+
Sbjct: 305 VHVIDSLDLDIHPGEMVALVGGSGSGKTTLGRAILRLAPSQSGQILFRGEDVRTAGRAAL 364

Query: 358 RPLRREMQVVFQDPFGSLSPRMCVADIVGEGLRIHRIGTAQEQEAAIIAALEEVGLDPRT 417
              R   Q+VFQDPF SL PRM V DIV E LR      A  +   +   L+EVGLD   
Sbjct: 365 HRFRLACQLVFQDPFSSLDPRMRVQDIVAEPLRHLPSLDAAARVRRVKETLDEVGLD-GL 423

Query: 418 RHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRNLQQKYNLT 477
             RYPHE SGGQRQR+AIARALV +PA ++ DEP SALD T+Q QV+ L ++LQQ +   
Sbjct: 424 GARYPHELSGGQRQRVAIARALVRRPAFVVADEPVSALDMTIQAQVLSLFQSLQQHHGFA 483

Query: 478 YLFISHDLAVVKALSHQLMVIKHGHVVEQGDAQAIFHAPQHPYTRQLLEA 527
            LFISHDLA V+ ++ +++V++ G +VEQG   A+F  P+H YT+ LL A
Sbjct: 484 CLFISHDLAAVEQIADRVIVMERGRIVEQGARDAVFDDPRHAYTQALLAA 533



 Score =  179 bits (453), Expect = 3e-49
 Identities = 115/282 (40%), Positives = 153/282 (54%), Gaps = 18/282 (6%)

Query: 4   QNLIEVRDLAVEFVTGDQVN--------RVVDGVSFDIRKGETLALVGESGSGKSVTAHS 55
           Q L++VR L V F +G +           V+D +  DI  GE +ALVG SGSGK+    +
Sbjct: 279 QPLVQVRSLCVSF-SGARAGLFKRHAPVHVIDSLDLDIHPGEMVALVGGSGSGKTTLGRA 337

Query: 56  ILRLLPYPLARHPSGSIRYEGKDLLQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQ 115
           ILRL P       SG I + G+D+       L R R     ++FQ+P +SL+P   ++  
Sbjct: 338 ILRLAP-----SQSGQILFRGEDVRTAGRAALHRFR-LACQLVFQDPFSSLDPRMRVQDI 391

Query: 116 INEILLLHKGLTGKEATARTLELLDMVGIPEPRKRLKALPHELSGGQRQRVMIAMALANE 175
           + E L     L       R  E LD VG+     R    PHELSGGQRQRV IA AL   
Sbjct: 392 VAEPLRHLPSLDAAARVRRVKETLDEVGLDGLGARY---PHELSGGQRQRVAIARALVRR 448

Query: 176 PELLIADEPTTALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQRGQ 235
           P  ++ADEP +ALD+T+Q ++L L + LQ   G A L ISHDL  V +IA RV VM+RG+
Sbjct: 449 PAFVVADEPVSALDMTIQAQVLSLFQSLQQHHGFACLFISHDLAAVEQIADRVIVMERGR 508

Query: 236 IVEQAECATLFSSPQHHYTQMLINAEPSGLPAHNPVGAPLLE 277
           IVEQ     +F  P+H YTQ L+ A P  L + +   A + E
Sbjct: 509 IVEQGARDAVFDDPRHAYTQALLAATPRPLASLDIAPAAISE 550