Pairwise Alignments

Query, 534 a.a., microcin C transporter - ATP binding subunit from Pseudomonas putida KT2440

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  443 bits (1139), Expect = e-128
 Identities = 253/556 (45%), Positives = 347/556 (62%), Gaps = 40/556 (7%)

Query: 6   LIEVRDLAVEFVTGDQVNRVVDGVSFDIRKGETLALVGESGSGKSVTAHSILRLLPYPLA 65
           L+ V  L+VEF  GD  +RVVD +SF +  G T+A+VGESGSGKSVT+ S +RL     A
Sbjct: 9   LLSVEGLSVEF--GD--SRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGA 64

Query: 66  RHPSGSIRYEGKDLLQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQINEILLLHKG 125
            +P+G I +EGKDLL+ S+K ++ IRG  IAMIFQEPMTSLNP+  I  QI E+L+LH+ 
Sbjct: 65  TYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEK 124

Query: 126 LTGKEATARTLELLDMVGIPEPRKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPT 185
           L    A  +  +LLDMV +P+  + L   PH+LSGG RQRVMIAMALA  P+LLIADEPT
Sbjct: 125 LGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPT 184

Query: 186 TALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQRGQIVEQAECATL 245
           TALDVT+Q +IL ++++LQ ++GM ++ I+HD+ +V  +A  V VM +G+ VE+     +
Sbjct: 185 TALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDI 244

Query: 246 FSSPQHHYTQMLINAEP-------SGLPAHNPVGA-----------------------PL 275
           F++PQH YT+ L++A P          P   P+                         PL
Sbjct: 245 FANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQKPL 304

Query: 276 LEVDDLKVWFPIKKGFLQRTVDHVKAVDGVNFSLPQGQTLGIVGESGSGKSTLGLAILRL 335
           L V DL V F I+K    +    + AV  V+F +  G+TL +VGESGSGKST+G  I +L
Sbjct: 305 LSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQL 364

Query: 336 ISS-QGGIRFHGQNLEGLNQKAVRPLRREMQVVFQDPFGSLSPRMCVADIVGEGLRIHRI 394
            ++  G I F+G++   ++      +R+E+Q +FQDPF SL PR  V   + E +  H  
Sbjct: 365 QTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTH-- 422

Query: 395 GTAQEQEAA---IIAALEEVGLDPRTRHRYPHEFSGGQRQRIAIARALVLKPALILLDEP 451
           G   +Q+A    +   LE VGL      RYPHEFSGGQRQR+ IARAL   P LI+ DE 
Sbjct: 423 GLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEA 482

Query: 452 TSALDRTVQRQVVELLRNLQQKYNLTYLFISHDLAVVKALSHQLMVIKHGHVVEQGDAQA 511
            SALD ++Q Q++ L  +LQ +  L YLFISHD+AVV+ +SH++ V+  G ++E G  Q 
Sbjct: 483 LSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQ 542

Query: 512 IFHAPQHPYTRQLLEA 527
           +F  P H YTR+LL A
Sbjct: 543 VFETPTHDYTRRLLSA 558



 Score =  179 bits (455), Expect = 2e-49
 Identities = 113/272 (41%), Positives = 160/272 (58%), Gaps = 16/272 (5%)

Query: 3   EQNLIEVRDLAVEF-----VTGDQVNRV--VDGVSFDIRKGETLALVGESGSGKSVTAHS 55
           ++ L+ V+DL V F     + G   +R+  V  VSFDI  GETLALVGESGSGKS    +
Sbjct: 301 QKPLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRT 360

Query: 56  ILRLLPYPLARHPSGSIRYEGKDLLQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQ 115
           I +L         SG I + G+   Q S     R+R   +  IFQ+P  SL+P   +   
Sbjct: 361 IQQL-----QTAVSGEIAFNGRSYSQMSAAERFRMR-QEVQYIFQDPFASLDPRKTVGFS 414

Query: 116 INEILLLHKGLTGKEATARTL-ELLDMVGIPEPRKRLKALPHELSGGQRQRVMIAMALAN 174
           I E +  H  +  ++A  R + ELL+ VG+    +     PHE SGGQRQRV IA ALA+
Sbjct: 415 IAEPINTHGLINDQKAVRRRVDELLERVGLSS--EHAARYPHEFSGGQRQRVCIARALAS 472

Query: 175 EPELLIADEPTTALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQRG 234
           +P+L+IADE  +ALDV++Q +I+ L  +LQA  G+A L ISHD+ +V +++HRV V+  G
Sbjct: 473 DPKLIIADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLG 532

Query: 235 QIVEQAECATLFSSPQHHYTQMLINAEPSGLP 266
           QI+E      +F +P H YT+ L++A P   P
Sbjct: 533 QIMELGSRQQVFETPTHDYTRRLLSAVPVADP 564