Pairwise Alignments

Query, 534 a.a., microcin C transporter - ATP binding subunit from Pseudomonas putida KT2440

Subject, 630 a.a., ABC transporter, nucleotide binding/ATPase protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  399 bits (1024), Expect = e-115
 Identities = 240/566 (42%), Positives = 339/566 (59%), Gaps = 46/566 (8%)

Query: 5   NLIEVRDLAVEF-VTGDQVNRVVDGVSFDIRKGETLALVGESGSGKSVTAHSILRLLPYP 63
           +L+ + +L V F + G  ++ V D  S  I  G+  ALVGESGSGKSV   +I+ +  +P
Sbjct: 6   DLLRIENLRVSFSLMGGTIDAVRD-TSLRILPGKVTALVGESGSGKSVIGQTIMGI--HP 62

Query: 64  LARHPSGSIRYEGK--------DLLQ--QSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIE 113
                +G + +           DLLQ  +  + ++ IRGNRI +IFQEPMTS +PLH I 
Sbjct: 63  KTARVNGRVLFTDPENAAAGPIDLLQLPKDGREIRSIRGNRIGLIFQEPMTSFSPLHTIG 122

Query: 114 KQINEILLLHKGLTGKEATARTLELLDMVGIPEPRKRLKALPHELSGGQRQRVMIAMALA 173
            QI+E L +H  L+  E   +  E LD+VG  +P+K +   P ELSGG RQR MIAMAL 
Sbjct: 123 NQIDEALRIHSILSPAERAEKMYETLDLVGFSKPKKVVNMYPFELSGGMRQRAMIAMALI 182

Query: 174 NEPELLIADEPTTALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQR 233
             P LLIADEPTTALDVT+Q +IL+LL++LQ+R+ M++LLI+HDL +V  IA  V V+ +
Sbjct: 183 CRPALLIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADEVAVIYQ 242

Query: 234 GQIVEQAECATLFSSPQHHYTQMLINAEP-------------------------SGLPAH 268
           G+I+E      +F +P H Y + L+ A P                             A 
Sbjct: 243 GEIMEAGTVDDIFKAPGHPYLKGLMAAVPHFDMKPGERLKALREIKVDHESLVGKKTAAV 302

Query: 269 NPVGAPLLEVDDLKVWFPIKKG--FLQRTVDHVKAVDGVNFSLPQGQTLGIVGESGSGKS 326
           N    PLL VD++   F  +K   F +   +  KAV+ V+F + +G+ LG+VGESGSGK+
Sbjct: 303 NKTPGPLLTVDNISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGSGKT 362

Query: 327 TLGLAILRLIS-SQGGIRFHGQ--NLEGLNQKA--VRPLRREMQVVFQDPFGSLSPRMCV 381
           T+   ++R +   +G I FH    +++ LN K   ++ LR ++Q+VFQDP  SLSPRM V
Sbjct: 363 TVSKILMRAVRPDEGSITFHRPEGDIDVLNAKDGDLKELRSKIQMVFQDPISSLSPRMTV 422

Query: 382 ADIVGEGLRIHRIGTAQEQEAAIIAALEEVGLDPRTRHRYPHEFSGGQRQRIAIARALVL 441
            +I+ E L IH  G A+ +   +   +  +GL     +RYPH FSGGQRQRI IARAL L
Sbjct: 423 GNILSEPLEIHGRGDAKYRAEKVRGLVRAIGLGESALNRYPHSFSGGQRQRIGIARALAL 482

Query: 442 KPALILLDEPTSALDRTVQRQVVELLRNLQQKYNLTYLFISHDLAVVKALSHQLMVIKHG 501
            P L++ DEP SALD +VQ Q++ LL++LQQ   LTYLFISH+LAVV  ++ ++ V+  G
Sbjct: 483 GPELLICDEPVSALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRVAVMCEG 542

Query: 502 HVVEQGDAQAIFHAPQHPYTRQLLEA 527
            +VE    + +  +P HPYT+ LL A
Sbjct: 543 RIVELAPREILMRSPIHPYTKSLLAA 568



 Score =  165 bits (417), Expect = 5e-45
 Identities = 105/243 (43%), Positives = 147/243 (60%), Gaps = 12/243 (4%)

Query: 24  RVVDGVSFDIRKGETLALVGESGSGKSVTAHSILRLLPYPLARHPSGSIRY---EGK-DL 79
           + V+ VSF+I +GE L LVGESGSGK+  +  ++R +     R   GSI +   EG  D+
Sbjct: 336 KAVNSVSFEICRGECLGLVGESGSGKTTVSKILMRAV-----RPDEGSITFHRPEGDIDV 390

Query: 80  LQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQINEILLLHKGLTGKEATARTLELL 139
           L   +  L+ +R ++I M+FQ+P++SL+P   +   ++E L +H     K    +   L+
Sbjct: 391 LNAKDGDLKELR-SKIQMVFQDPISSLSPRMTVGNILSEPLEIHGRGDAKYRAEKVRGLV 449

Query: 140 DMVGIPEPRKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILEL 199
             +G+ E    L   PH  SGGQRQR+ IA ALA  PELLI DEP +ALDV+VQ +IL L
Sbjct: 450 RAIGLGE--SALNRYPHSFSGGQRQRIGIARALALGPELLICDEPVSALDVSVQAQILNL 507

Query: 200 LKELQARMGMALLLISHDLNLVRRIAHRVCVMQRGQIVEQAECATLFSSPQHHYTQMLIN 259
           LK+LQ  +G+  L ISH+L +V  +A RV VM  G+IVE A    L  SP H YT+ L+ 
Sbjct: 508 LKDLQQDLGLTYLFISHNLAVVDYMADRVAVMCEGRIVELAPREILMRSPIHPYTKSLLA 567

Query: 260 AEP 262
           A P
Sbjct: 568 AVP 570



 Score =  157 bits (396), Expect = 1e-42
 Identities = 97/273 (35%), Positives = 149/273 (54%), Gaps = 24/273 (8%)

Query: 272 GAPLLEVDDLKVWFPIKKGFLQRTVDHVKAVDGVNFSLPQGQTLGIVGESGSGKSTLGLA 331
           GA LL +++L+V F +  G    T+D   AV   +  +  G+   +VGESGSGKS +G  
Sbjct: 4   GADLLRIENLRVSFSLMGG----TID---AVRDTSLRILPGKVTALVGESGSGKSVIGQT 56

Query: 332 ILRLISSQGGIRFHGQNLEGLNQKA--------------VRPLR-REMQVVFQDPFGSLS 376
           I+ +      +       +  N  A              +R +R   + ++FQ+P  S S
Sbjct: 57  IMGIHPKTARVNGRVLFTDPENAAAGPIDLLQLPKDGREIRSIRGNRIGLIFQEPMTSFS 116

Query: 377 PRMCVADIVGEGLRIHRIGTAQEQEAAIIAALEEVGLDPRTR--HRYPHEFSGGQRQRIA 434
           P   + + + E LRIH I +  E+   +   L+ VG     +  + YP E SGG RQR  
Sbjct: 117 PLHTIGNQIDEALRIHSILSPAERAEKMYETLDLVGFSKPKKVVNMYPFELSGGMRQRAM 176

Query: 435 IARALVLKPALILLDEPTSALDRTVQRQVVELLRNLQQKYNLTYLFISHDLAVVKALSHQ 494
           IA AL+ +PAL++ DEPT+ALD T+Q Q+++LLR+LQ + N++ L I+HDL VV  ++ +
Sbjct: 177 IAMALICRPALLIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADE 236

Query: 495 LMVIKHGHVVEQGDAQAIFHAPQHPYTRQLLEA 527
           + VI  G ++E G    IF AP HPY + L+ A
Sbjct: 237 VAVIYQGEIMEAGTVDDIFKAPGHPYLKGLMAA 269