Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score =  101 bits (251), Expect = 9e-26
 Identities = 118/481 (24%), Positives = 195/481 (40%), Gaps = 65/481 (13%)

Query: 87  IYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHPMRADDVVFTFNA 146
           I+D L+    DE F     +A   E + D + + F LR +  +HDG P  + DV ++   
Sbjct: 70  IFDGLVEY--DEGFKLKPSLATSWETSADGTVITFRLRNDVTWHDGTPFTSADVAYSLLE 127

Query: 147 LIKDGAPLYRQYYADVAEVVAEEPLKVLFKFKHKNNRELPLILG-----QLPVLPKHWYE 201
           + K   P     +A++  V   +P   + +F    +R  P++       +  +LPKH YE
Sbjct: 128 VTKKVHPRGNAVFANLTAVDTPDPYTAVLRF----SRPSPVVWAAFNGTETQILPKHLYE 183

Query: 202 NREFNRGNLE-IPLGSGPYKVAKVKAGRSVRYERVKDYWAKDLPINRGFYNFDAMTFDAY 260
                   L   P+G+G +   +   G  +  ER  +YW K  P        D + F   
Sbjct: 184 GTNPLTNPLNGKPIGTGAFVFKEWVKGERIVLERNPNYWDKGRPY------LDRVVFRII 237

Query: 261 RDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAVREGRLIKEELPNGNPTGMQGFIFNI 320
           RD      AL+ G   Y + ++    +    + A ++  L+ E      P  M  F FN+
Sbjct: 238 RDPASRAAALETGEAQY-IPLNPVPLSDVARIKASKD--LVVETRGFEGPAPMYFFDFNL 294

Query: 321 RRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGSYFENSEMAARGLPSPNELKILEP 380
           RR  F D+RVRQA +  L+ +   + +F G                          + +P
Sbjct: 295 RREPFGDIRVRQAFAHALNRKALAETVFYG--------------------------LAKP 328

Query: 381 LRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAYKLLQEAGWKIVDDKMVDAQGKPASIEF 440
             G VP    T+ F   +      I     +A  LL  AG K        A G    I+ 
Sbjct: 329 AAGPVPSYQ-TQFFATDLPQYDYNI----AKAEALLDAAGLK------KGADGVRLRIDH 377

Query: 441 LLAQ--TEFERILLPFKRNLADLGIELNIRRVDVSQYITRLRSR-DYDMIVGGYPQSNSP 497
           + +    ++ R    FK+ L  +G+++ +R  D+  YI  + +  D+D     Y     P
Sbjct: 378 IPSAYGEDYRRAGEYFKQALKRIGVDVTLRNYDLPTYIKVVFTEYDFDTHSAWYSAYPDP 437

Query: 498 G-NEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQLI---NADSRQSLIDHCRALDRVL 553
               QR +WS A      S N  G+ DP ID +++++    N + R + I   + L +V 
Sbjct: 438 QIGVQRRYWSQAIKKGTPSSNASGIADPEIDAVIERIQTEGNVEKRNADIRELQRLAQVK 497

Query: 554 L 554
           L
Sbjct: 498 L 498