Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score = 95.9 bits (237), Expect = 4e-24
 Identities = 112/441 (25%), Positives = 173/441 (39%), Gaps = 70/441 (15%)

Query: 106 VAGKIEKAPDNSWVRFYLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEV 165
           +A   E+APD   + F LR    +HDG P  A DV ++   ++K   P     Y+ + ++
Sbjct: 79  LAESYEQAPDGRSITFRLRKGVTWHDGVPFTAADVKYSILEVVKKTHPRGIGTYSQLQDI 138

Query: 166 VAEEPLKVLFKFKHKNNRELPLILGQL-----PVLPKHWYENRE--FNRGNLEIPLGSGP 218
              +   V+ +    +    P+I   L      +LPKH YE  +   N  N + P+G+GP
Sbjct: 139 ETPDDHTVILRLAKPS----PVIWSALNSSETQILPKHLYEGTDPLTNPWNTK-PIGTGP 193

Query: 219 YKVAKVKAGRSVRYERVKDYWAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYG 278
           +   +   G  V  ER  +YW    P        D +TF    D         AGA    
Sbjct: 194 FIFKEWVRGSHVTLERNPNYWDAGKPY------LDRLTFRFVPD---------AGARAAA 238

Query: 279 LEVSAKNWATAYNVPAVREGRLIKEELPNGNPTGMQGFI------FNIRRPVFQDVRVRQ 332
           LE     +     VP     RL K         G +         FN+RRP FQDVRVR+
Sbjct: 239 LETGEAQYVPLSPVPLSDVERLAKRPDLVVETRGWEAVAPVFFLDFNMRRPQFQDVRVRR 298

Query: 333 ALSLLLDYEWTNKQLFNGAYTRTGSYFENSEMAARGLPSPNELKILEPLRGKVPEQVFTE 392
           A++L +D +   + ++ G                            EP  G VP   F  
Sbjct: 299 AIALAIDKKALARTVWYG--------------------------FAEPATGPVP--AFQT 330

Query: 393 VFHNPVSDGSGMIREQQRQAYKLLQEAGWKIVDDKMVDAQGKPASIEFLLAQTEFERILL 452
            F    + G        ++A  LL EAG K   D  V  +    SI +     +F+R   
Sbjct: 331 AF---AATGLPQYDYDPKKAEALLDEAGLKRGPDG-VRLRFNHVSIPY---GDDFKRSGE 383

Query: 453 PFKRNLADLGIELNIRRVDVSQYITRLRSR-DYDMIVGGYPQSNSPG-NEQREFWSSAAA 510
             ++ L  +GIE+ +   D+  ++ ++ +  D+D +   Y     P    QR FWS    
Sbjct: 384 FIRQQLKKVGIEVELLNYDLPTFLRKIYTEYDFDTLNAYYAAFADPQIGVQRRFWSQTIR 443

Query: 511 DNPGSRNFIGLRDPAIDQLVD 531
                 N  G  +P +D L++
Sbjct: 444 PGSAWSNASGYSNPKVDALLE 464