Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 535 a.a., Oligopeptide-binding protein AppA from Xanthobacter sp. DMC5

 Score =  111 bits (278), Expect = 7e-29
 Identities = 127/508 (25%), Positives = 213/508 (41%), Gaps = 64/508 (12%)

Query: 72  NPFINKGVAAENIGIIYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFYLRPEARFHD 131
           N F N  V+      IYD L+  + D+       +A   E +PD   + F+LR   ++HD
Sbjct: 57  NQFSNGAVSVN----IYDGLV--AYDDNLGLKPALAESWEISPDKLTITFHLRHGVKWHD 110

Query: 132 GHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVLFKFKHKNNREL-PLILG 190
           G P  + DV F+   + K      R  +A++ +V   +    +F+F+  +   L  L   
Sbjct: 111 GAPFTSADVRFSALEIWKKVHSRGRLTFAELEDVETPDAYTAIFRFRAPSLVVLSALNAW 170

Query: 191 QLPVLPKHWYENREF--NRGNLEIPLGSGPYKVAKVKAGRSVRYERVKDYWAKDLP-INR 247
           +  VLPKH YEN +   N  N+E P+G+GP+K      G ++   R  DYW    P ++R
Sbjct: 171 EGQVLPKHLYENTDILKNPHNVE-PVGTGPFKFKSWTKGEAIELVRNADYWDAGKPYLDR 229

Query: 248 GFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAVREGRLIKEELPN 307
             Y F         D      A++ G   Y    +A +     ++  VR+   +K E   
Sbjct: 230 VIYRF-------IPDGGARAAAIEIGDVGY----AAFDPVPFADIERVRKLPNLKVESRG 278

Query: 308 GNPTGMQGFI-FNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGSYFENSEMAA 366
                   F+ FN+R P+  D+RVR+A +  +D                           
Sbjct: 279 YEWNAKYYFLEFNLRNPILADIRVRRAFAHAID--------------------------R 312

Query: 367 RGLPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAYKLLQEAGWKIVDD 426
           +GL       ++ P  G +P   FT+ F+              ++A +LL EAG+K    
Sbjct: 313 QGLADTVWFGLVAPATGPIPS--FTKAFYTADVPTYAF---DPKEAERLLDEAGYK---- 363

Query: 427 KMVDAQGKPASI--EFLLAQTEFERILLPFKRNLADLGIELNIRRVDVSQYITRL-RSRD 483
               A G   SI  +F      F +     ++NL  +G+E+N+R  D+  ++ R+  S D
Sbjct: 364 --RGANGVRFSINQDFQPFNENFRKTAEYIRQNLKRVGVEVNVRSQDLGAFVRRVYGSYD 421

Query: 484 YDMIVGGYPQSNSPG-NEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQLINADSRQSL 542
           +D+  G +     P     R+FWS + A      N  G  DP  D++++ + +A   +  
Sbjct: 422 FDINTGQFSVFIDPELGLLRQFWSKSIAPGIPWTNASGYADPGTDKVIEGIKSAADPEQR 481

Query: 543 IDHCRALDRVLLWGYYVIPNWHIKTWRV 570
           +     L R +     V+P   +K + V
Sbjct: 482 VALFHELQRRVQRDLPVLPLLELKQFTV 509