Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 610 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  412 bits (1059), Expect = e-119
 Identities = 239/603 (39%), Positives = 338/603 (56%), Gaps = 15/603 (2%)

Query: 6   RLRRLAGSLLLACLSL-----PALAAP---QHALTLYDEPPKYPADFKHFDYVNPDAPKG 57
           RL R A S+L   L +     PA+A       A+T+  +P   P  F    Y N +APKG
Sbjct: 9   RLTRTAPSVLALLLLVFGATKPAVAQALDKASAITMRGKPA-LPPGFTSLAYANSNAPKG 67

Query: 58  GTFRQSSFGGFDSLNPFINKGVAAENI-GIIYDTLMRQSQDEPFTEYGLVAGKIEKAPDN 116
           G    S  G FDSLNPFI KG +   + G + ++LM +S DEPFT Y L+A  +      
Sbjct: 68  GRLTLSLLGTFDSLNPFIVKGTSPGVLRGTVTESLMARSLDEPFTLYPLIARTVSTDEKR 127

Query: 117 SWVRFYLRPEARFHDGHPMRADDVVFTFNALIKD-GAPLYRQYYADVAEVVAEEPLKVLF 175
           S+V F L P ARF DG  + + DV+F+F AL++D G P +R YY  + +  A +   V F
Sbjct: 128 SFVEFALDPAARFSDGSALTSADVLFSF-ALMRDMGRPNHRLYYGKITKAEAPDAHTVRF 186

Query: 176 KFKHKNNRELPLILGQLPVLPKHWYENREFNRGNLEIPLGSGPYKVAKVKAGRSVRYERV 235
            F   +  ELPLI+G +PV  +   +   F    L   LGSGPY+V  V AG ++  ER 
Sbjct: 187 TFAEPDP-ELPLIMGLMPVFSEQATDRTRFEETTLTPLLGSGPYRVTNVNAGAALTLERN 245

Query: 236 KDYWAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAV 295
            DYW +++  NRG YNFD +    +RD     EA + G  D   E     W TAY+ PAV
Sbjct: 246 PDYWGRNVAFNRGLYNFDRLDTVYFRDANSEFEAFRKGLIDARFESDPGRWETAYDFPAV 305

Query: 296 REGRLIKEELPNGNPTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRT 355
           R G ++KE +P G P     F+FN RRP+  D+RVRQAL  L D+EW ++  ++G Y RT
Sbjct: 306 RSGEVVKETIPTGIPKPYSAFVFNTRRPLLADIRVRQALIELFDFEWLDRSFYHGLYRRT 365

Query: 356 GSYFENSEMAARGLPS-PNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAYK 414
           GS+FE S +++ G P+   E  +L P  G V   V    +  PVSDG+G  R + + A  
Sbjct: 366 GSFFEGSALSSIGRPADARERALLAPFPGSVVPDVLAGTYRPPVSDGTGRDRIRLKAALD 425

Query: 415 LLQEAGWKIVDDKMVDA-QGKPASIEFLLAQTEFERILLPFKRNLADLGIELNIRRVDVS 473
           LL++AG+ +    +VDA  G+P ++E ++   + ER+ L ++  L   GI LN+R VD  
Sbjct: 426 LLEQAGFVLRKGALVDAGNGRPFALELMVVTRDQERLALAWQAQLKRAGITLNVRSVDAV 485

Query: 474 QYITRLRSRDYDMIVGGYPQSNSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQL 533
           Q+ TR ++ D+DM+   + QS SPGNEQ  ++ +AAAD PGSRN++G + PAID  +  L
Sbjct: 486 QFDTRRQAYDFDMMPYAWSQSLSPGNEQAFYFGAAAADTPGSRNYMGAKAPAIDATIAAL 545

Query: 534 INADSRQSLIDHCRALDRVLLWGYYVIPNWHIKTWRVAYWNHIGHPNVSPKYDIGIDTWW 593
           I A   ++ +   RALDRVL+ G Y +P +H     +A W  I  P  +  Y    +TWW
Sbjct: 546 IAARDEEAYVAAARALDRVLISGAYAVPLFHTPGQWLARWTRIARPERASLYGTLPETWW 605

Query: 594 IKP 596
             P
Sbjct: 606 RVP 608