Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 636 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  540 bits (1391), Expect = e-158
 Identities = 283/588 (48%), Positives = 372/588 (63%), Gaps = 10/588 (1%)

Query: 17  ACLSLPALAAPQHALTLYDEPPKYPADFKHFDYVNPDAPKGGTFRQSSFGGFDSLNPFIN 76
           A  + PA    +H L+L  EP  YP  F HF YVNP+APKGG  R +  G FD+ N  + 
Sbjct: 39  ASATTPATPVFKHGLSLMGEPA-YPPGFPHFKYVNPNAPKGGLLRLAEDGTFDTFNFVVP 97

Query: 77  KGVAAENIGIIYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHPMR 136
           +G  A  I +IYDTLM  + DE  +EYGL+A  +    D S V + +R +AR+HDG P+ 
Sbjct: 98  RGTPAAGINLIYDTLMVPASDEVASEYGLIAEGVSYPADFSSVTYRIRADARWHDGKPIT 157

Query: 137 ADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVLFKFKHKNNRELPLILGQLPVLP 196
            +DVVF+F AL K+  P  R YY+ V +        V F F    NRELP I+GQL +LP
Sbjct: 158 PEDVVFSFEALTKNN-PNQRFYYSHVTKAEKTGDRDVTFTFDQAGNRELPQIVGQLTILP 216

Query: 197 KHWYENREFN-------RGNLEIPLGSGPYKVAKVKAGRSVRYERVKDYWAKDLPINRGF 249
           KHW+   + N       +G+LE+PLGSG Y+V    AGRS+ YERVKDYWAKDL +N G 
Sbjct: 217 KHWWTGTDANGKPRDIAQGSLEVPLGSGAYRVKSFIAGRSITYERVKDYWAKDLNVNVGK 276

Query: 250 YNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAVREGRLIKEELPNGN 309
            NFD M ++ +RD TV LEA KA  +D+ +E SAKNWATAY+ PA  +GR++ E   N +
Sbjct: 277 DNFDEMRYEYFRDDTVMLEAFKADQYDFRVESSAKNWATAYDFPARADGRVVLEMFENRS 336

Query: 310 PTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGSYFENSEMAARGL 369
              MQ FI N+RR  F+D RVR+AL+  LD+E  N  LF G Y RT S+F  +E+A+ GL
Sbjct: 337 SGVMQAFIPNLRRDKFKDPRVRRALNYALDFEGMNHTLFFGQYKRTNSFFSGTELASSGL 396

Query: 370 PSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAYKLLQEAGWKIVDDKMV 429
           P   EL+IL  ++ KVP QVFT  + NP S      R   R+A +L +EAG+++ + K+V
Sbjct: 397 PQGRELEILNSVKDKVPPQVFTTAYTNPESGSEEARRANLREAARLFKEAGYEVKNRKLV 456

Query: 430 DAQGKPASIEFLLAQTEFERILLPFKRNLADLGIELNIRRVDVSQYITRLRSRDYDMIVG 489
           +A+G+P +IEFLL+    ER+ + ++  L  LGIE++IR VD SQYI R+RSRDYD+IV 
Sbjct: 457 NAKGEPFTIEFLLSSPAMERVAVFYRPALERLGIEVSIRMVDTSQYINRVRSRDYDIIVS 516

Query: 490 GYPQSNSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQLINADSRQSLIDHCRAL 549
           G+ QS SPGNEQREFW S AAD  GSRN  G++DPA+D L++++I A  R  L+    AL
Sbjct: 517 GWGQSLSPGNEQREFWGSEAADRDGSRNLAGIKDPAVDALIEKVIYASDRADLVAATHAL 576

Query: 550 DRVLLWGYYVIPNWHIKTWRVAYWNHIGHPNVSPKYDIGI-DTWWIKP 596
           DRVLLW  YVIP W +   R A W+   HP   P Y     D WW  P
Sbjct: 577 DRVLLWNEYVIPAWGLNYTRTARWDRFAHPAQLPTYSFAFPDIWWFDP 624