Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 633 a.a., Oligopeptide-binding protein AppA from Xanthobacter sp. DMC5

 Score =  499 bits (1284), Expect = e-145
 Identities = 255/580 (43%), Positives = 363/580 (62%), Gaps = 10/580 (1%)

Query: 23  ALAAPQHALTLYDEPPKYPADFKHFDYVNPDAPKGGTFRQ--------SSFGGFDSLNPF 74
           A A  +H ++ + +  +YPA+F HFDYVNPDAPKGG F Q         S   FD+LNP+
Sbjct: 45  AAAVERHGISFFGDL-RYPANFTHFDYVNPDAPKGGPFSQLGRATYYNQSLTTFDTLNPY 103

Query: 75  INKGVAAENIGIIYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHP 134
             +G  A+ I +IYDTLM  + DE    YG +A  +  A +    RF LR EARFHDG P
Sbjct: 104 NQRGNGAQGIELIYDTLMTAAGDEKSAMYGRLASSVVIADEGLTYRFKLRREARFHDGTP 163

Query: 135 MRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVLFKFKHKNNRELPLILGQLPV 194
           + + DVV TF A   +G    R    DV    A+ P +V+F+FK    R++PL +  LP+
Sbjct: 164 LTSADVVATFEAFKAEGYETIRMALRDVTSFEADGPNEVVFRFKPGRARDVPLTVAGLPI 223

Query: 195 LPKHWYENREFNRGNLEIPLGSGPYKVAKVKAGRSVRYERVKDYWAKDLPINRGFYNFDA 254
             K +     F + +LE+P+GSGPY++ + + GR + Y RV  YW +DLP+ +G +NFD 
Sbjct: 224 FSKAFLARHPFGQSSLEVPMGSGPYRIGRFEQGRYIEYNRVPTYWGRDLPVMKGRFNFDQ 283

Query: 255 MTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAVREGRLIKEELPNGNPTGMQ 314
           + ++ +RD    LE  KA A+ +  E +A+ WAT Y+ PAVREGR+  E LP+ + +G+Q
Sbjct: 284 VRYEYFRDRVAGLEGFKAKAYLFREEFTAREWATGYDFPAVREGRVKVETLPDESFSGVQ 343

Query: 315 GFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGSYFENSEMAARGLPSPNE 374
           G+ FN RRP F D RVR+AL LL D++WT K L   +YTRT S+F+NSEM A+GLPSP E
Sbjct: 344 GWFFNTRRPKFFDRRVREALGLLFDFDWTRKNLMYDSYTRTVSFFQNSEMMAQGLPSPAE 403

Query: 375 LKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAYKLLQEAGWKIVDDKMVDAQGK 434
           LK+L+P R ++PE+VF E +  P SDGSG  R  +R A  LL+EAG+ +   ++VDA+G+
Sbjct: 404 LKLLDPFRDRLPEEVFGEPYVPPQSDGSGEDRNLRRLALNLLKEAGYTVQQGRLVDAKGE 463

Query: 435 PASIEFLLAQTEFERILLPFKRNLADLGIELNIRRVDVSQYITRLRSRDYDMIVGGYPQS 494
             ++EFL +    ER    F  +L  +GIE + R VD +Q+  RL++ D+D++V  Y  +
Sbjct: 464 AFTMEFLDSDGSMERHTARFIGHLKKVGIEASFRIVDPAQFQQRLQNFDFDLVVRRYSFA 523

Query: 495 NSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQLINADSRQSLIDHCRALDRVLL 554
             PG+E R ++S+ AA   GS N  G+ DPA+D L++  + A    +L+  CRALDRVL 
Sbjct: 524 PYPGDELRAYFSTEAARTRGSYNVAGIADPAVDGLINDALAAADAAALVTACRALDRVLR 583

Query: 555 WGYYVIPNWHIKTWRVAYWNHIGHPNVSPKYDIGI-DTWW 593
            G Y IP W+    R+AYWN   HP   P+Y++G+ DTWW
Sbjct: 584 AGRYWIPQWYSGQNRIAYWNQFAHPATKPRYELGVLDTWW 623