Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 554 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 90.1 bits (222), Expect = 2e-22
 Identities = 111/487 (22%), Positives = 190/487 (39%), Gaps = 65/487 (13%)

Query: 56  KGGTFRQSSFGGFDSLNPFINKGVAAENIGI-IYDTLMRQSQDEPFTEYGLVAGKIEKAP 114
           +GGT   +      SL  F++      N+   + + L+R   D  FT   L+A   + +P
Sbjct: 57  EGGTLTYAVSQEPTSLVSFLDTKTDNRNVSAKVTEGLLRY--DAKFTPQPLLATAWQVSP 114

Query: 115 DNSWVRFYLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVL 174
           D     F LRP  +FHDGH   A+DV ++     K G P  R   A+V  V   +PL  +
Sbjct: 115 DGLKYSFKLRPGVKFHDGHDFTAEDVRYSVLTQKKQG-PRGRITLANVERVDTPDPLTAV 173

Query: 175 FKFKHKNNRELPLIL-----GQLPVLPKHWYENRE-FNRGNLEIPLGSGPYKVAKVKAGR 228
                  +R  P +L      +LP++P H Y + E     N+  P+G+GP+   +   G 
Sbjct: 174 IVL----SRPAPFLLKSLSSAELPIVPAHRYSDGEPLGNPNITAPVGTGPFVFEQWVRGS 229

Query: 229 SVRYERVKDYWAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWAT 288
            +   +  +YW K      G+ + D +     RD      A++ G  D    V   +   
Sbjct: 230 HLVLRKNPNYWRK------GYPHLDRVIVKFVRDPAAISTAVETGEVDVAQGVGLADLER 283

Query: 289 AYNVPAVREGRLIKEELPNGNPTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLF 348
               P     +L  ++  +G         FN+  PV  + +VR A++  +D         
Sbjct: 284 LAGNP-----KLKVDDTYDGFLNNASFLEFNVDNPVLANPKVRHAIAQAIDRN------- 331

Query: 349 NGAYTRTGSYFENSEMAARGLPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQ 408
              + R   Y++  E+    +P                      V  +   D +      
Sbjct: 332 ---FIRNTIYYKRVEVVNSPIP---------------------RVLSDYYDDSTFRYPFD 367

Query: 409 QRQAYKLLQEAGWKIVDDKMVDAQGKPASIEF-LLAQTEFERILLPFKRNLADLGIELNI 467
              A +LL EAG      +   A G+  S+    +   EF+R     +  LA +GI++ +
Sbjct: 368 VAAANRLLDEAG------QPKQANGQRFSLRLSYIPGAEFKRTTDYLRSALARVGIKVEV 421

Query: 468 RRVDVSQYITRLRS-RDYDMIVGGYPQSNSPG-NEQREFWSSAAADNPGSRNFIGLRDPA 525
              D+  ++  + S RD+D+ + G  +   P    QR +W     +     N     +P 
Sbjct: 422 VDGDLPTFLKHVYSTRDFDININGLGRLFDPTVGVQRIYWGDGVRNPLIWINAAHYDNPQ 481

Query: 526 IDQLVDQ 532
           +D+L  Q
Sbjct: 482 VDELFRQ 488