Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 75.9 bits (185), Expect = 4e-18
 Identities = 102/425 (24%), Positives = 170/425 (40%), Gaps = 68/425 (16%)

Query: 121 FYLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVLFKFKHK 180
           F LR   R+HDG P  + DV  +   L+K   P  R  ++ VAEV   +    +      
Sbjct: 107 FTLRRGVRWHDGKPFTSADVAHSIG-LLKQYHPRGRATFSSVAEVRTPDAYTAVLVL--- 162

Query: 181 NNRELPLILGQL-----PVLPKHWYEN--REFNRGNLEIPLGSGPYKVAKVKAGRSVRYE 233
            ++ +P +L  L     P++P+H YE+   + N  N   P+G+GP+   +   G  V YE
Sbjct: 163 -SKPVPYLLTALSASESPIVPRHLYESGKADANPAN-NAPIGTGPFVFKEWVRGSHVTYE 220

Query: 234 RVKDYWAKDLP-INRGFYNFDAMTFDAYRDTTVALEALKAGAFDYG-LEVSAKNWATAYN 291
           R  DYW    P ++R    F            +   A +A A + G + +S        +
Sbjct: 221 RNPDYWDNPKPYVDRLIVRF------------IPDAAARAAAIEKGEVHLSPGTPVPLGD 268

Query: 292 VPAVR-EGRLIKEELPNGNP--TGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLF 348
           V  +R +  L+ E  PNG      +    FN+  P  QD+RVRQA++  ++ +   K ++
Sbjct: 269 VERLRAKPNLVFE--PNGYQYINNVSRVEFNLENPALQDLRVRQAIAHAINRQVVQKTVW 326

Query: 349 NGAYTRTGSYFENSEMAARGLPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQ 408
            G                 G   P   K   P    +P  V        + D +G +R +
Sbjct: 327 YG-----------QGQLIPGPVHPALRKFYVPDLPVLPHDVKRA---EALLDAAGFVRGK 372

Query: 409 QRQAYKLLQEAGWKIVDDKMVDAQGKPASIEFLLAQTEFERILLPFKRNLADLGIELNIR 468
                +L             +  +G   + E+L             K++L  +GIE+ I 
Sbjct: 373 AGGNLRLKLAV-------VPISNEGGQRTAEYL-------------KQSLGRIGIEVTIH 412

Query: 469 RVDVSQYITRL-RSRDYDMIVGGYPQSNSPG-NEQREFWSSAAADNPGSRNFIGLRDPAI 526
             D + Y+ R+   R +D+ V     +  P    QR +WS          N  G  +P +
Sbjct: 413 SQDFATYVRRVYADRAFDLHVSVMSNTFDPTVGIQRLYWSKNFKKGLPFSNGSGYSNPEV 472

Query: 527 DQLVD 531
           D+L++
Sbjct: 473 DRLLE 477