Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 84.3 bits (207), Expect = 1e-20
 Identities = 101/425 (23%), Positives = 164/425 (38%), Gaps = 53/425 (12%)

Query: 113 APDNSWVRFYLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLK 172
           +PD     F LR   ++HDG    + DV ++   L+K   P  R  +A++  +   +   
Sbjct: 88  SPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIE-LLKKIHPRGRNTFANLTAIDTPDKYT 146

Query: 173 VLFKFKHKNNREL-PLILGQLPVLPKHWYENRE-FNRGNLEIPLGSGPYKVAKVKAGRSV 230
            + +        +  L+  + P++PKH YE  +  N  N   P+G+GP+K  +   G  +
Sbjct: 147 AILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNAPIGTGPFKFKEWVRGSHI 206

Query: 231 RYERVKDYWAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLE--VSAKNWAT 288
            YER  DYW K  P        D +      D   A  A + G  D G    V   +   
Sbjct: 207 VYERNNDYWDKPKPF------VDQLIVRFVTDPAAAAVAFETGTVDLGYRTPVPLADLER 260

Query: 289 AYNVPAVREGRLIKEELPNGNPTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLF 348
              VPA+R      E   N   + +    FN+    F++ +VRQA++  +D     K + 
Sbjct: 261 LKKVPALR-----FETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAIDRNVIVK-VV 314

Query: 349 NGAYTRTGSYFENSEMAARGLPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQ 408
           N  Y +  SY       A GL                      + FH+P           
Sbjct: 315 NYGYGQV-SY----SPIAPGL----------------------KAFHDPAPSPYAF---D 344

Query: 409 QRQAYKLLQEAGWKIVDDKMVDAQGKPASIEFLLAQTEFERILLPFKRNLADLGIELNIR 468
            ++A  LL EAG+     K          ++F     +  R+    +  LA +GI + +R
Sbjct: 345 VKKANALLDEAGF----PKKAGGVRFSVPLDFNPIGADGPRLADYLRSALARIGIAVTVR 400

Query: 469 RVDVSQYITRL-RSRDYDMIVGGYPQSNSPG-NEQREFWSSAAADNPGSRNFIGLRDPAI 526
             D S +I R+   RD+     G      P    QR +WS          N    ++P +
Sbjct: 401 AQDPSAFIKRIYTDRDFAFTHNGASNLFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVV 460

Query: 527 DQLVD 531
           D+L++
Sbjct: 461 DKLLE 465