Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 601 a.a., ABC transporter, periplasmic substrate-binding protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  451 bits (1159), Expect = e-131
 Identities = 248/585 (42%), Positives = 347/585 (59%), Gaps = 10/585 (1%)

Query: 14  LLLACLSLPALAAP---QHALTLYDEPPKYPADFKHFDYVNPDAPKGGTFRQSSFGGFDS 70
           LL+A +S  A A      +A  +  EP KY  +F+HFDYVNP APKGG    S+ G FD+
Sbjct: 8   LLVALVSAGAQAQEIKESYAFAVLGEP-KYAFNFEHFDYVNPAAPKGGQMTLSAIGTFDN 66

Query: 71  LNPFINKGVAAENIGIIYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFYLRPEARFH 130
            N +  +G        +YDTL   S DEP + Y L+A     A D SWV   + P ARFH
Sbjct: 67  FNRYSLRGNPGVRTEALYDTLFTTSDDEPGSYYPLIADHARYAADYSWVEISINPRARFH 126

Query: 131 DGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVLFKFKHKNNRELPLILG 190
           DG P+ A DV FTF+  + +G P +R  Y     V A  PL V  +   K  +E  L L 
Sbjct: 127 DGTPITARDVAFTFHKFMTEGVPQFRLVYKGTT-VKAIAPLTVRIELA-KPGKEDMLSLF 184

Query: 191 QLPVLPKHWYENREFNRGNLEIPLGSGPYKVAKVKAGRSVRYERVKDYWAKDLPINRGFY 250
            LP++P+ +++N + +      PL SGPY++ + K G+ + Y RVK+YWA +LP+NRG +
Sbjct: 185 SLPIMPEKFWKNHKLSDPLSTPPLASGPYRITQWKMGQYIVYSRVKNYWAANLPVNRGRF 244

Query: 251 NFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAVREGRLIKEELPNGNP 310
           N D + +D Y D  VA EA KAGAFD  LE  AKNWAT Y         +IKEE  N + 
Sbjct: 245 NLDTIRYDYYLDDNVAFEAFKAGAFDLRLENDAKNWATRYIGKNFDNHYIIKEEQKNESA 304

Query: 311 TGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGSYFENSEMAARGLP 370
              +   FNI+RPVF+D RVR+A++L  D+EW NK LF  A++RT SYF+N+E AAR  P
Sbjct: 305 QDTRWLAFNIQRPVFKDRRVREAVTLAFDFEWMNKALFYNAWSRTNSYFQNTEYAARNYP 364

Query: 371 SPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAYKLLQEAGWKIVDDKMVD 430
             +EL +L P++  +P +VFT+++  PVS+G G  RE   +A  LL +AGW I   + V+
Sbjct: 365 DADELVLLAPMKKDLPPEVFTQIYQPPVSNGDGYDRENLLKADALLTQAGWVINGQQRVN 424

Query: 431 A-QGKPASIEFLLAQTEFERILLPFKRNLADLGIELNIRRVDVSQYITRLRSRDYDMIVG 489
           +  GKP + E LL  +   + +LPF+ NL  LGI + IR+VD SQ   R+RSRDYDM+  
Sbjct: 425 SVTGKPLTFELLLPASSNSQWVLPFQHNLQRLGITMTIRQVDNSQLTNRMRSRDYDMMPR 484

Query: 490 GYPQSNSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQLINAD-SRQSLIDHCRA 548
            +     P ++ +  W+S   D+  S N  G++ P +D+L+ Q+I A   +  L+   RA
Sbjct: 485 LWRAMPWPSSDLQISWASEYIDS--SYNAPGVQSPVVDKLIAQIIAAQGDKAKLVPLGRA 542

Query: 549 LDRVLLWGYYVIPNWHIKTWRVAYWNHIGHPNVSPKYDIGIDTWW 593
           LDRVL W YY++P W++   R+A W+   HP + P Y IG+DTWW
Sbjct: 543 LDRVLTWNYYMLPMWYMAQDRLARWDKFSHPAIRPVYTIGLDTWW 587