Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 531 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 105/456 (23%), Positives = 174/456 (38%), Gaps = 68/456 (14%)

Query: 87  IYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHPMRADDVVFTFNA 146
           IYD L+  + D   +    +A +   + D     F+L+P A+FHDG P+ + DV F+   
Sbjct: 66  IYDGLL--TYDYELSPKPSLAKEWSVSADGLEYVFHLQPNAKFHDGKPVTSADVEFSILR 123

Query: 147 LIKDGAPLYRQYYADVAEVVAEEPLKVLFKF-KHKNNRELPLILGQLPVLPKHWYEN-RE 204
           L K+  P  R  +A+V  +    PL    K  K        L   + PV+PKH +E  + 
Sbjct: 124 L-KEAHPRGRATFANVESIDTSNPLVAKVKLSKPAPGLITALASSESPVVPKHIFETFKP 182

Query: 205 FNRGNLEIPLGSGPYKVAKVKAGRSVRYERVKDYWAKDLPINRGFYNFDAMTFDAYRDTT 264
            +       +GSGP+ + +   G  +  E+  +YW    P        D +      D  
Sbjct: 183 TDNPKPAQIIGSGPFVLKEWVPGSHILLEKNANYWDAPRPY------LDRVIIRLINDAG 236

Query: 265 VALEALKAGAFDYGLE-VSAKNWATAYNVPAVREGRLIKEELPNGNPTGMQGFIFNIRRP 323
               AL+ G  D G   V+  +     ++P ++    I       N       + N+   
Sbjct: 237 ARAAALETGEGDIGPNPVALADLERLKSIPTLKVDDRIYAYAGQQNQ-----LVINLEND 291

Query: 324 VFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGSYFENSEMAARGLPSPNELKILEPLRG 383
             ++++VRQA++  +D           A   T  Y          +PSP     + P   
Sbjct: 292 YLKELKVRQAIAHAIDVP---------ALIDTVLY-------GYAVPSPTP---ISPGLA 332

Query: 384 KVPEQVFTEVFHNPVSDGSGMIREQQRQAYKLLQEAGWKIVDD------KMVDAQGKPAS 437
           K         FHNP     G  +     A KLL EAG+   D       ++      P +
Sbjct: 333 K---------FHNP---DIGFAKFDVALAEKLLDEAGFPRKDGGKRFKLRVTTNPFNPQT 380

Query: 438 IEFLLAQTEFERILLPFKRNLADLGIELNIRRVDVSQYITRL-RSRDYDMIVGGYPQSNS 496
               +AQ             L+ +GIE +I++ D   Y+  +   R +D+ V     +  
Sbjct: 381 YSDFIAQA------------LSKIGIEADIQKFDFGTYVKVVYTDRAWDLSVESLSNTFD 428

Query: 497 P-GNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVD 531
           P    QR +WS          N     +P +D+L++
Sbjct: 429 PTAGVQRVYWSKNFKIGLPFSNASHYANPEVDRLLE 464