Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 535 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 88.6 bits (218), Expect = 6e-22
 Identities = 109/471 (23%), Positives = 184/471 (39%), Gaps = 76/471 (16%)

Query: 105 LVAGKIEKAPDNSWVRFYLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAE 164
           L+A   + + D     F LRP  ++HDG P  + DV F+ +  IK+  P  R  + ++  
Sbjct: 84  LLAKSWDVSADGLRYTFNLRPGVKWHDGKPFTSADVAFSIST-IKEVHPRGRNTFLNLTA 142

Query: 165 V-VAEEPLKVLFKFKHKNNRELPLILGQLPVLPKHWYENREFNRGNLEI-PLGSGPYKVA 222
           V    E   VL   K        L   + P++PKH YE  +     + + P+G+GP+K  
Sbjct: 143 VETPNELTAVLVLSKPAPYLITALAAAETPIVPKHLYEGTKVTENPVNLAPIGTGPFKFK 202

Query: 223 KVKAGRSVRYERVKDYWAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVS 282
           +   G  + +ER  DYW    P        D +      D +    A++ G  D      
Sbjct: 203 EWVRGSHIVFERNADYWDAPRPY------LDRLIVRFIPDASARAIAIETGEID------ 250

Query: 283 AKNWATAYNVPAVREGRLIKEELP------NG--NPTGMQGFIFNIRRPVFQDVRVRQAL 334
                 A + P         +ELP      NG      +    FN+ + VF+DVRVR+A 
Sbjct: 251 -----LAPSTPVAYSDLDRLKELPSLGFDTNGYQYTNSISRVEFNLEKDVFKDVRVRRAF 305

Query: 335 SLLLDYEWTNKQLFNGAYTRTGSYFENSEMAARGLPSPNELKILEPLRGKVPEQVFTEVF 394
           + ++D       +FN      G+                   I  P+  K+ +    ++ 
Sbjct: 306 AHVID----RNVIFNTVNFGYGA------------------TIAGPINPKLTKWFVNDLK 343

Query: 395 HNPVSDGSGMIREQQRQAYKLLQEAGWKIVDDKMVDAQGKPASIEFLLAQTEFERILLPF 454
             P+           + A  LL EAG+K    +  D      +++++ +   + R     
Sbjct: 344 TYPI---------DLKAAEALLDEAGYK----RGADGIRFKLNLDYVPSTEAYPRGADYI 390

Query: 455 KRNLADLGIELNIRRVDVSQYITRL-RSRDYDMIVGGYPQSNSPG-NEQREFWSSAAADN 512
           ++ LA +G+++ +R  D + Y  R+   RD+D    G      P    QR +WS      
Sbjct: 391 RQALAKVGVDVTVRTQDFATYTKRIYTDRDFDFAYEGMSNLFDPTVGVQRLYWSKNFKKG 450

Query: 513 PGSRNFIGLRDPAIDQLVDQL---INADSR--------QSLIDHCRALDRV 552
               N     +P +D L++     I+ D R        Q L++   A+D V
Sbjct: 451 VPFSNGAAYSNPKVDALLEAAAIEIDPDKRVAQWKEIQQILVEDVPAIDIV 501